Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,544,051 – 8,544,143 |
Length | 92 |
Max. P | 0.992595 |
Location | 8,544,051 – 8,544,143 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 91.18 |
Mean single sequence MFE | -19.36 |
Consensus MFE | -19.30 |
Energy contribution | -18.86 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -2.53 |
Structure conservation index | 1.00 |
SVM decision value | 2.34 |
SVM RNA-class probability | 0.992595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8544051 92 + 20766785 UCGAGUGUGUGUUUCUGCUCAGCCCACUUUUGGAGCACCCACCCACACACACACACACACAACGACCUCGUCACACUCGACACGCCAAUUCC ((((((((((((...((....(((((....))).))...))...)))))))).........(((....))).....))))............ ( -19.90) >DroSec_CAF1 19656 84 + 1 UUGAGUGUGUGCUUCUGCUCAGCCCACUUUUGGAGCACC----CAC----ACACACAUACUACGACCUCGUCACACUCGACACGCCAAUUCC ....(((((((....(((((............)))))..----..)----)))))).............(((......)))........... ( -19.20) >DroSim_CAF1 23275 88 + 1 UUGAGUGUGUGCUUCUGCUCAGCCCACUUUUGGAGCACCCACCCAC----ACACACACACAACGACCUCGUCACACUCGACACGCCAAUUCC (((((((((((((((................)))))))........----...........(((....))).))))))))............ ( -18.99) >consensus UUGAGUGUGUGCUUCUGCUCAGCCCACUUUUGGAGCACCCACCCAC____ACACACACACAACGACCUCGUCACACUCGACACGCCAAUUCC (((((((((((((((................))))))).......................(((....))).))))))))............ (-19.30 = -18.86 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:12 2006