Locus 2330

Sequence ID 2R_DroMel_CAF1
Location 8,540,931 – 8,541,035
Length 104
Max. P 0.861344
window3844

overview

Window 4

Location 8,540,931 – 8,541,035
Length 104
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 84.04
Mean single sequence MFE -24.67
Consensus MFE -17.01
Energy contribution -16.68
Covariance contribution -0.33
Combinations/Pair 1.12
Mean z-score -2.49
Structure conservation index 0.69
SVM decision value 0.83
SVM RNA-class probability 0.861344
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8540931 104 + 20766785
GAAAACGAAAGUGCUAUUUUUGCGCUACU--UUUCAGAUGAUCAUUAAUAAUUGUGCUCUCUAGAGAAGAGUGCUGUUCGAAUUUGGCAAAAGUCAAGUUCGCAUG
....((....))((.......(((((.((--(((((((.((.(((........))).))))).))))))))))).....(((((((((....)))))))))))... ( -32.10)
>DroSec_CAF1 16444 95 + 1
GAAAACGAAAGCGCUAUUUUUACGCUACCGAGUACAUGUGAUCAUUAAUAAAU-----------AGAAAAGUGCUAUUCGAAUUUGGCAAAAGUCAAGUUCACAUG
......(((((((((.((((((.(((....)))..(((....))).......)-----------))))))))))).)))(((((((((....)))))))))..... ( -21.00)
>DroSim_CAF1 19993 95 + 1
GAAAACGAAAGCGCUAUUUUUACGCUACCAAGUACAUGUGAUCAUUAAUAAAU-----------AGAAAAGUGCUGUUCGAAUUUGGCAAAAGUCAAGUUCACAUG
......(((((((((.((((((.(((....)))..(((....))).......)-----------))))))))))).)))(((((((((....)))))))))..... ( -20.90)
>consensus
GAAAACGAAAGCGCUAUUUUUACGCUACC_AGUACAUGUGAUCAUUAAUAAAU___________AGAAAAGUGCUGUUCGAAUUUGGCAAAAGUCAAGUUCACAUG
......(((((((((.(((((...............(((........)))..............))))))))))).)))(((((((((....)))))))))..... (-17.01 = -16.68 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:07 2006