Locus 233

Sequence ID 2R_DroMel_CAF1
Location 1,578,913 – 1,579,015
Length 102
Max. P 0.805192
window510

overview

Window 0

Location 1,578,913 – 1,579,015
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 79.41
Mean single sequence MFE -19.00
Consensus MFE -13.56
Energy contribution -12.90
Covariance contribution -0.66
Combinations/Pair 1.15
Mean z-score -1.74
Structure conservation index 0.71
SVM decision value 0.63
SVM RNA-class probability 0.805192
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1578913 102 - 20766785
UGAAUGACAUUAAAUUCCAUAUUUUAUUCAUUGAAAAUGUAUGAAAUUUAUAAUCAUUUAUGAUCUAUGAUUUCAAUGGCGUUUACAACGCCAAGUGUCAAA
....(((((((.......(((((((........))))))).(((((((....((((....))))....))))))).((((((.....))))))))))))).. ( -23.90)
>DroSec_CAF1 17982 102 - 1
UGACUGACAUUAAACUCCAUAUUUUAUUCAUUGAAAAUGCAUGAAAGCUAUGAUCAUUUGUGAGCUAUGAUUUCAAUGGCUUUUACAGCGCCAAAUGUUAAA
....(((((((..........(((((.....)))))..((.((((((((((((((((..(....).))))))...))))))))))..))....))))))).. ( -19.50)
>DroSim_CAF1 14243 85 - 1
UGACUGACAUUAAAUUCCAUAUUUUAUUCAUUGAAAAUGCAUGAAAGCUA-----------------UGAUAUCAAUGGUAUUUACACCGCCAAGUGUCAAG
....(((((((......((((((((((.(((.....))).))))))..))-----------------)).......((((.........))))))))))).. ( -13.60)
>consensus
UGACUGACAUUAAAUUCCAUAUUUUAUUCAUUGAAAAUGCAUGAAAGCUAU_AUCAUUU_UGA_CUAUGAUUUCAAUGGCAUUUACAACGCCAAGUGUCAAA
....(((((((..........((((((.(((.....))).))))))..............................((((.........))))))))))).. (-13.56 = -12.90 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:07 2006