Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,531,666 – 8,531,786 |
Length | 120 |
Max. P | 0.879733 |
Location | 8,531,666 – 8,531,786 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.12 |
Mean single sequence MFE | -46.68 |
Consensus MFE | -40.22 |
Energy contribution | -41.23 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.86 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8531666 120 + 20766785 UACCCCAAGAGAGAGCCCGCUCUCCUUGGCAAUUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGAUGGGUAGGUGGGUGGUGGGCGACGGUGG ....(((...(...((((((((((((((.(.....(((((((...((((((..((.((((((.....)))))).))..)))))).)))))))..).)))).))).)))))))..)..))) ( -47.20) >DroSec_CAF1 7112 118 + 1 UACCCCAAGA--GAGCCCGCUCUCCUUGGCAAUUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGUUGGGUAGGUGGGUGGUGGGCGGCGCUGC ..........--.(((((((((.((((.((..((..((((((...((((((..((.((((((.....)))))).))..)))))).))))))..))....)).)).)).)))))).))).. ( -44.50) >DroSim_CAF1 10453 118 + 1 UACCCCAAGA--GAGCCCGCUCUGCUUGGCAAUUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGCUGGGUAGGUGGGUGGUGGGCGGCGGUGG ..(((((...--..((((((.(((((..((.......(((((...((((((..((.((((((.....)))))).))..)))))).)))))))..)))))))))))..)))).)....... ( -49.21) >DroYak_CAF1 10230 114 + 1 UACCCCAAGA--GAGCCCGCUCUCCUUGGCAAAUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGAUGGGUAGG----UGGUGGGCGAUGGUGG ..(((((...--..(((((((..(((..((.....(((((((...((((((..((.((((((.....)))))).))..)))))).)))))))...)))))----.)))))))..))).)) ( -45.80) >consensus UACCCCAAGA__GAGCCCGCUCUCCUUGGCAAUUUUCUAGCGUUUCAACUCUCAUCGCCAGCAGUUCGUUGGCUGUUUGAGUUGUUGUUGGAUGGGUAGGUGGGUGGUGGGCGACGGUGG ....(((.......((((((((..((((.(.....(((((((...((((((..((.((((((.....)))))).))..)))))).)))))))..).))))..)..))))))).....))) (-40.22 = -41.23 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:53 2006