Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,531,509 – 8,531,628 |
Length | 119 |
Max. P | 0.947273 |
Location | 8,531,509 – 8,531,628 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.68 |
Mean single sequence MFE | -38.83 |
Consensus MFE | -30.39 |
Energy contribution | -31.95 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.11 |
Mean z-score | -2.87 |
Structure conservation index | 0.78 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8531509 119 - 20766785 GAAAGAGAGCAAUGGGGCCAAGAAAGUAGGCAAGGGGGUGGUGGAGGUGGGCAGGG-GAUGGCAAAAGCGGAGAGAGAAACAAUUUUACUGCUAGCAUUGCCACGUUUAUGCGUCUCCAA ................(((.........)))..((((..((((((.((((.(((..-....((...(((((.((((.......)))).))))).)).))))))).))))).)..)))).. ( -30.60) >DroSec_CAF1 6954 120 - 1 GAAAGAGAGCAAUGGGGCCAAGAAAGUAGGCAAGGGGGUGGUGGUGUUGAGCAGGGGGCUGGCAACAGCGGAGAGAGAAACAAUUUUACUGCUAGCAUUGCCACGUUUAUGCGUCUCCAA ....(((((((.....(((.........)))..(((.((((..(((((.(((((...((((....))))...((((.......)))).))))))))))..)))).))).))).))))... ( -43.70) >DroSim_CAF1 10295 120 - 1 GAAAGAGAGCAAUGGGGCCAAGAAAGUGGGCAAGGGGGUGGUGGUGUUGAGCAGGGGGCUGGCAACAGCGGAGAGAGAAACAAUUUUACUGCUAGCAUUGCCACGUUUAUGCGUCUCCAA ............((((((((......)))(((..((.((((..(((((.(((((...((((....))))...((((.......)))).))))))))))..)))).))..)))..))))). ( -45.00) >DroYak_CAF1 10071 119 - 1 GAAAGAGAGCAAUGAGGUUAAGAAAGUUGACAAGGGGGUGGUGGAAGAGAGCGGGU-GGUGGCAGCAGCGGAGAGAGAAACAGUUUUGCUGCUAGCAUUGCCACGUUUAUGCGUCCCCGA ................(((((.....)))))...((((..(((.....(((((((.-.(((..((((((((((..........))))))))))..)))..)).))))).)))..)))).. ( -36.00) >consensus GAAAGAGAGCAAUGGGGCCAAGAAAGUAGGCAAGGGGGUGGUGGAGGUGAGCAGGG_GCUGGCAACAGCGGAGAGAGAAACAAUUUUACUGCUAGCAUUGCCACGUUUAUGCGUCUCCAA ....(((((((.....(((.........)))..(((.((((..(((((.(((((...((((....))))...((((.......)))).))))))))))..)))).))).))).))))... (-30.39 = -31.95 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:52 2006