Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,530,529 – 8,530,643 |
Length | 114 |
Max. P | 0.660057 |
Location | 8,530,529 – 8,530,643 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.32 |
Mean single sequence MFE | -25.08 |
Consensus MFE | -20.64 |
Energy contribution | -20.95 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -1.73 |
Structure conservation index | 0.82 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8530529 114 - 20766785 ACAAAAAAAAGAGCAGAAGCAUAAACAAGAGACAGCAGCAGCA------ACAACACUAACGAAAUGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUUUAAAAUUGCUGUCAGCCA ...(((((..((((((..((((............((....)).------......(....)..))))......))))))..)))))(((..(.((.(((((.....))))).))).))). ( -25.70) >DroSec_CAF1 6045 112 - 1 A--AAAAAAAGAGCAGAAGCAUAAACAAGAGACAGCAGCAACA------ACAACACUAACGAAAGGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUUUAAAAUUGCUGUCAGCCA .--.........((....))..........((((((((.....------..........(....)((.((..((.((.(((....))).)))).)))).........))))))))..... ( -24.70) >DroSim_CAF1 9300 115 - 1 A--AAAAAAAGAGCAGAAGCAUAAACAAGAGACAGCAGCAACA---ACAACAACACUAACGAAAGGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUCUAAAAUUGGUGUCAGCCA .--.........((((..((.....((((((..((((((....---.............(....)(.....)))))))...))))))..))...))))..........((((....)))) ( -22.80) >DroYak_CAF1 9030 119 - 1 AC-AAAAAAAGAGCAGAAGCAUAAACAAGAGACAGUAGCAACAGCAGCAACAACACCAACGAAAGGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUUUAAAAUUGCUGUCAGCCA ..-(((((..((((((..((..............((.((....)).))...........(....)))......))))))..)))))(((..(.((.(((((.....))))).))).))). ( -27.10) >consensus A__AAAAAAAGAGCAGAAGCAUAAACAAGAGACAGCAGCAACA______ACAACACUAACGAAAGGCGAGACGCUGCUCCAUUUUUGGCGCGCACUGCAAUUUAAAAUUGCUGUCAGCCA ............((....))..........((((((((.....................(....)((.((..((.((.(((....))).)))).)))).........))))))))..... (-20.64 = -20.95 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:51 2006