Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,578,110 – 1,578,207 |
Length | 97 |
Max. P | 0.617193 |
Location | 1,578,110 – 1,578,207 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 87.81 |
Mean single sequence MFE | -17.22 |
Consensus MFE | -15.56 |
Energy contribution | -15.90 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.90 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1578110 97 - 20766785 AACGCCAGUUUGGGUCCUUUAUUAAAUCCCAAAAAAGUACAGACCAUAAAACAACUAACUUGCUGGCCUACAAACGACCACUGGUCAGAAUCCAAAU ...(((((((((((.............)))))..((((...................))))))))))........((((...))))........... ( -17.73) >DroSec_CAF1 17145 85 - 1 AACGCCAGUUUGGGUCCCUUAUUAAAUCCCAAGAAAGUACAGAC------------AACUUGCUGGCCCACAAACGACCAGUGCUCAGAAUCCAAAU ...(((((((((((.............)))))..((((......------------.)))))))))).(((.........))).............. ( -14.92) >DroSim_CAF1 13410 85 - 1 AACGCCAGUUUGGGUCCCUUAUUAAAUCCCAAGAAAGUACAGAC------------AACUUGCUGGCCCACAAACGACCAGUGGUCAGAAUCCAAAU ...(((((((((((.............)))))..((((......------------.))))))))))........((((...))))........... ( -19.02) >consensus AACGCCAGUUUGGGUCCCUUAUUAAAUCCCAAGAAAGUACAGAC____________AACUUGCUGGCCCACAAACGACCAGUGGUCAGAAUCCAAAU ...(((((((((((.............)))))..((((...................))))))))))........((((...))))........... (-15.56 = -15.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:06 2006