Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,526,088 – 8,526,207 |
Length | 119 |
Max. P | 0.977217 |
Location | 8,526,088 – 8,526,207 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.63 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -27.12 |
Energy contribution | -27.75 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.03 |
Mean z-score | -2.24 |
Structure conservation index | 0.91 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977217 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8526088 119 + 20766785 ACUCAAAUGUCUAUCGCCUGUGG-CACACAAUCUGCCUGAUAAGUACCUGAAAAUGUUAAUACCCAAAGGUGUUGACGAAUUUCGCGGUAGACGGCUAAUGCCCAAAACUAUUCCUUUGU ...((((.(((((((((....((-((.......))))............((((.((((((((((....))))))))))..)))))))))))))(((....)))............)))). ( -35.70) >DroSec_CAF1 1611 119 + 1 AAUCAAAUGUCUAUCGCCAUUGA-UACACAAUUUGCCUGAUAAGUAACUGAAAAUGUUAAUACCCAAAGGUGUUGACGAAUUUCGCGGUAGACGGCUAAUGCCCAACACUAUUUCUUUGU ...((((.(((((((((......-........((((.......))))..((((.((((((((((....))))))))))..)))))))))))))(((....)))............)))). ( -31.10) >DroSim_CAF1 4763 119 + 1 AAUCAAAUGUCUAUCGCCAGUGA-CACACAAUCUGCCUGAUAAGUAACUGAAAAUGUUAAUACCCAAAGGUGUUGACGAAUUUCGCGGUAAACGGCUAAUGCCCAACACUAUUUCUUUGU ...((((.((.((((((((((..-.((...(((.....)))..)).))))....((((((((((....))))))))))......)))))).))(((....)))............)))). ( -27.70) >DroYak_CAF1 4481 120 + 1 AAUCAAAUGUCUAUCGCCAGUGAACACACAAUCUUACUGAUAAGUACCUUAAAAUGUUAAUGCCCAAAGUCGUUGACGAAUGUCGCGGCAGACGGCUAAUGCCCAAAACUAUUCCUUUGU ...((((.((((..(((((((((..........))))))...............(((((((((.....).))))))))......)))..))))(((....)))............)))). ( -25.00) >consensus AAUCAAAUGUCUAUCGCCAGUGA_CACACAAUCUGCCUGAUAAGUAACUGAAAAUGUUAAUACCCAAAGGUGUUGACGAAUUUCGCGGUAGACGGCUAAUGCCCAAAACUAUUCCUUUGU ...((((.(((((((((..(((....))).........................((((((((((....))))))))))......)))))))))(((....)))............)))). (-27.12 = -27.75 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:43 2006