Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,525,210 – 8,525,316 |
Length | 106 |
Max. P | 0.884348 |
Location | 8,525,210 – 8,525,316 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.88 |
Mean single sequence MFE | -25.31 |
Consensus MFE | -17.30 |
Energy contribution | -17.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.68 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8525210 106 - 20766785 UUCAGCCGACGCAGGCAGUGGCAAUAGCAACA--------------ACAGCAAUAGCAACAAAUACAAUGUAAAGCUGAUAAGUCUGUUUUCGCAAACGACGGCGAAAAGUCAAAAGUCC .......(((((((((.((.((....)).)).--------------.((((....(((..........)))...))))....))))))((((((........)))))).)))........ ( -24.60) >DroSec_CAF1 692 88 - 1 UUCAGCCGACGCAGGCAGUGGCA--------------------------------GCAACAAAUACAUCGUAACGCUGAUAAGUCUGUUUUCGCCAACGACGGCGAAAAGUCAAAAGUCC .......(((((((((.....((--------------------------------((.................))))....))))))(((((((......))))))).)))........ ( -24.63) >DroYak_CAF1 3540 120 - 1 UUCAGCCGAAGCAGGCAGUGGCAAUGGCAACAGUAAAAGCAAAAGCAAAGCAAAAGCAACAAAUACACUCUAAAGCUGAUAAGUCUGUUUUCGCAAACGACGGCGAAAAGUCAAAAGUCC (((.((((((((((((..((((..((....))(((...((....))...((....))......)))........))))....))))))))(((....))))))))))............. ( -26.70) >consensus UUCAGCCGACGCAGGCAGUGGCAAU_GCAACA______________A_AGCAA_AGCAACAAAUACAAUGUAAAGCUGAUAAGUCUGUUUUCGCAAACGACGGCGAAAAGUCAAAAGUCC ....(((......)))..((((....................................................(((....)))...(((((((........)))))))))))....... (-17.30 = -17.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:42 2006