Locus 2315

Sequence ID 2R_DroMel_CAF1
Location 8,521,844 – 8,521,952
Length 108
Max. P 0.972936
window3812

overview

Window 2

Location 8,521,844 – 8,521,952
Length 108
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 91.72
Mean single sequence MFE -25.09
Consensus MFE -23.46
Energy contribution -23.02
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -2.61
Structure conservation index 0.94
SVM decision value 1.70
SVM RNA-class probability 0.972936
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8521844 108 + 20766785
CGUAAGCCUUAGAACUAACCCGAAC---AACACUGAGCAAUAUCUACAACACAGCGGAAUGUAUCUGUUGGAUGCGAAAACCGCAUCAUUUGCAUACAUA----UAUGCAAACAU
.....((.((((.............---....)))))).............(((((((.....)))))))((((((.....)))))).((((((((....----))))))))... ( -25.23)
>DroSim_CAF1 176 111 + 1
CGUAAGCCUUAGAACUAAACCGAACAACAACACUGAGCAAUAUCUACAACGCAGUGGAAUGUAUCUGUUGGAUGCGAAAACCGCAUCAUUUGCAUACAUA----UAUGCAAACAU
...........................(((((..(((((...(((((......))))).))).)))))))((((((.....)))))).((((((((....----))))))))... ( -24.90)
>DroYak_CAF1 182 109 + 1
CGUAAGCCUUAGAACUAACCCGAAC---AACACUAAGCAAUAUCUAC---ACAGCGGAAUGUAUCUGUUGGAUGCGAAAACCGCAUCAUUUGCAUACAUAUGUAUAUGCAAACAU
.....((.((((.............---....)))))).........---.(((((((.....)))))))((((((.....)))))).((((((((........))))))))... ( -25.13)
>consensus
CGUAAGCCUUAGAACUAACCCGAAC___AACACUGAGCAAUAUCUACAACACAGCGGAAUGUAUCUGUUGGAUGCGAAAACCGCAUCAUUUGCAUACAUA____UAUGCAAACAU
.....((.((((....................)))))).............(((((((.....)))))))((((((.....)))))).((((((((........))))))))... (-23.46 = -23.02 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:37 2006