Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,518,378 – 8,518,470 |
Length | 92 |
Max. P | 0.913277 |
Location | 8,518,378 – 8,518,470 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 68.67 |
Mean single sequence MFE | -36.83 |
Consensus MFE | -21.35 |
Energy contribution | -22.13 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.20 |
Mean z-score | -1.61 |
Structure conservation index | 0.58 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913277 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8518378 92 + 20766785 CCCAGUUCGAUUGCCAGUGCGGCUAACAAGAUGCCAAAGCGAUCCAUGUCCCUGGACGAAUCGCA---------UCCGGCCAAGCAGGCGAGAUUGAGCCA------------------- ....(((((((((((.((..((((.....(((((.....((.((((......))))))....)))---------)).))))..)).)))..))))))))..------------------- ( -29.90) >DroMoj_CAF1 4179 120 + 1 CCCAGCUCCAUUGCCAGCGCGGCCAACAAGCAGCCGAAGCGCGCCUUGUCGCUGGACGAGAGUCAGCAGCAAUUGCUGGCCAAGCAGCCGCGCCUGGACUACCAGCAACAGCAGCAACAG ....((((..((((..(((((((......((.((....))))((((((((....)))))).((((((((...))))))))...)).))))))).(((....)))))))..).)))..... ( -44.50) >DroYak_CAF1 3043 92 + 1 CCCAGCUCGAUUGCCAGUGCGGCCAACAAGAUGCCAAAGCGAUCCAUGUCCCUGGACGAAUCGCA---------UCCGGCCAAGCAGGCGCGAUUGAGCCA------------------- ....(((((((((((..(((((((.....(((((.....((.((((......))))))....)))---------)).))))..))).).))))))))))..------------------- ( -36.10) >consensus CCCAGCUCGAUUGCCAGUGCGGCCAACAAGAUGCCAAAGCGAUCCAUGUCCCUGGACGAAUCGCA_________UCCGGCCAAGCAGGCGCGAUUGAGCCA___________________ ....((((((((((..((..((((.....(((((....)).)))..((((....))))...................))))..))....))))))))))..................... (-21.35 = -22.13 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:36 2006