Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,509,238 – 8,509,328 |
Length | 90 |
Max. P | 0.875880 |
Location | 8,509,238 – 8,509,328 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 74.91 |
Mean single sequence MFE | -25.28 |
Consensus MFE | -11.01 |
Energy contribution | -11.45 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.16 |
Mean z-score | -2.02 |
Structure conservation index | 0.44 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875880 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8509238 90 + 20766785 UAGAGGGGUCAAGCAGUGUCAAACGGACUUAAA-AAGGUCGGAAACGCUUAAUUUAUUUCAUACACA----------------------------UUGUCACAAUGUGUAGAAUAAAGC ..........((((...........(((((...-.)))))(....)))))..(((((((..((((((----------------------------(((...)))))))))))))))).. ( -21.50) >DroSec_CAF1 21819 90 + 1 UAGAGUGGUCAAGCAGUGUCAAACGGACUUAAA-AAGGUCGGAAACGCUUAAUUUAUUUCAUACACA----------------------------UUGUCACAAUGUGUAGAAUAAAGC ..........((((...........(((((...-.)))))(....)))))..(((((((..((((((----------------------------(((...)))))))))))))))).. ( -21.50) >DroSim_CAF1 22542 90 + 1 UAGAGGGGUCAAGCAGUGUCAAACGGACUUAAA-AAGGUCGGAAACGCUUAAUUUAUUUCAUACACA----------------------------UUGUCACAAUGUGUAGAAUAAAGC ..........((((...........(((((...-.)))))(....)))))..(((((((..((((((----------------------------(((...)))))))))))))))).. ( -21.50) >DroEre_CAF1 21315 119 + 1 UAGAGGGGUCAAGCAGUGUCAAACGGACUUAAAAAAGGUCGGAAACGACUAAUUUAUUUCGAACGCAGAACUCAUAGCUGUUGACCUCUUUAAAUUUGUCUGUAUGUGUAGUGUAAGCU ((((((((((((.(((((((.....)))........(((((....)))))..........................))))))))))))))))........................... ( -32.10) >DroYak_CAF1 23386 117 + 1 UGGAGGGGUCAAACAGUGUCAAACGGAAUUAAA-AAGGUCGGAAACGCCUAAUUUAUUUCAUUCGCAGAACUCAUACCUGUUGACCUCUUUAAAAUUAUCCAAAUGUGC-GAGUAAGCU ((((((((((((.(((.((.....(((((....-.(((.((....))))).....))))).......(....)..)))))))))))))))))...............((-......)). ( -29.80) >consensus UAGAGGGGUCAAGCAGUGUCAAACGGACUUAAA_AAGGUCGGAAACGCUUAAUUUAUUUCAUACACA____________________________UUGUCACAAUGUGUAGAAUAAAGC .....(((((.....((.....)).))))).....(((.((....)))))..(((((((..((((((.....................................))))))))))))).. (-11.01 = -11.45 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:35 2006