Locus 2310

Sequence ID 2R_DroMel_CAF1
Location 8,496,424 – 8,496,523
Length 99
Max. P 0.998968
window3803

overview

Window 3

Location 8,496,424 – 8,496,523
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 95.15
Mean single sequence MFE -26.26
Consensus MFE -25.68
Energy contribution -25.36
Covariance contribution -0.32
Combinations/Pair 1.12
Mean z-score -1.89
Structure conservation index 0.98
SVM decision value 3.30
SVM RNA-class probability 0.998968
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8496424 99 + 20766785
GGUUGUAAUAUAAACACAUGUUUCUUGUUUCGUUAUUUAUAGUGGUCGCUUCACUCUGUUUGGAUAGCGAUAAAGCAGGAGUAUCGAAACAACCGACCG
(((((......((((....)))).((((((((.(((((...((.((((((....(((....))).))))))...))..))))).)))))))).))))). ( -27.70)
>DroSec_CAF1 8747 99 + 1
GGUUGUAAUAUAAACACAUGUUUCUUGUUUCGUUAUUUACAGUGGUCGCUUCACUCUGUUUGGAUAGCGAUAAAGCAGGAGUAUCGAAACAACCGACCG
(((((......((((....)))).((((((((.(((((...((.((((((....(((....))).))))))...))..))))).)))))))).))))). ( -27.70)
>DroSim_CAF1 8650 99 + 1
GGUUGUAAUAUAAACACAUGUUUAUUGUUUCGUUAUUUAUAGUGGUCGCUUCACUCUGUUUGGAUAGCGAUAAAGCAGGAGUAUCGAAACAACCGACCG
(((((.....(((((....)))))((((((((.(((((...((.((((((....(((....))).))))))...))..))))).)))))))).))))). ( -29.80)
>DroEre_CAF1 6303 99 + 1
GAUUGUAAUAUAAACACAUGUUUCUUGUUUCGUUAUUUAUAGUGGUCGCUUCACUCUGUUUGGAUAGCGAUAAAGCAAAAAUAUCGGAGCAACCGACCG
...................(((..((((((((.(((((...((.((((((....(((....))).))))))...))..))))).))))))))..))).. ( -21.20)
>DroYak_CAF1 9066 99 + 1
GGUUGUCAUAUAAACACAUGUUUCUUGUUUCGUUAUUUAUAUUGGUCGCUUUACUCUGUUUGGAUAGCGAUAAAGCAAGAGUAUCGGAACAACCGACCG
(((((......((((....)))).((((((((.(((((......((((((....(((....))).)))))).......))))).)))))))).))))). ( -24.92)
>consensus
GGUUGUAAUAUAAACACAUGUUUCUUGUUUCGUUAUUUAUAGUGGUCGCUUCACUCUGUUUGGAUAGCGAUAAAGCAGGAGUAUCGAAACAACCGACCG
(((((......((((....)))).((((((((.(((((...((.((((((....(((....))).))))))...))..))))).)))))))).))))). (-25.68 = -25.36 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:28 2006