Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,577,600 – 1,577,720 |
Length | 120 |
Max. P | 0.604455 |
Location | 1,577,600 – 1,577,720 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -38.07 |
Consensus MFE | -31.97 |
Energy contribution | -33.87 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.06 |
Mean z-score | -2.07 |
Structure conservation index | 0.84 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1577600 120 + 20766785 UUCCGCCUUCCAAAUGGCUGGUACACGGAUACGGAUACUCGCCAGUGGUGACAUCUUUUAACUUAAGUGCUGGCGGCAAUGCAAAUGCUUGCAAAUUGCUCAGUUAUUCCAUGGCACAGU ....(((.....(((((((((((..((....))..))).((((((((....)........((....)))))))))(((((((((....)))))..)))).))))))))....)))..... ( -36.90) >DroSec_CAF1 16662 119 + 1 UUCCGCCUUUCGAAUGGCUGGAAUACGGAUGGGGAUACUUCCCAUUGGUGACAUCCUUUAACUUAAGUGCUGGCGGCAAUGCAAAUGCUUGCAAAUAGCUCAGUUAUUCCAU-GCACAGU (((((((........))).))))(((.((((((((...)))))))).)))................(((((((..((((.((....)))))).((((((...))))))))).-))))... ( -36.70) >DroSim_CAF1 12892 120 + 1 UUCCGCCUUUCGAAUGGCUGGAAUACGGAUGGGGAUACUUCCCAUUGGUGACAUCCUUUAACUUAAGUGCUGGCGGCAAUGCAAAUGCUUGCAAAUAGCUCAGUUAUUCCAUGGCACAGU ....(((....((((((((((..(((.((((((((...)))))))).)))..................((((...((((.((....))))))...))))))))))))))...)))..... ( -40.60) >consensus UUCCGCCUUUCGAAUGGCUGGAAUACGGAUGGGGAUACUUCCCAUUGGUGACAUCCUUUAACUUAAGUGCUGGCGGCAAUGCAAAUGCUUGCAAAUAGCUCAGUUAUUCCAUGGCACAGU ....(((....((((((((((..(((.((((((((...)))))))).)))..................((((...((((.((....))))))...))))))))))))))...)))..... (-31.97 = -33.87 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:05 2006