Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,490,275 – 8,490,377 |
Length | 102 |
Max. P | 0.999095 |
Location | 8,490,275 – 8,490,377 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -28.80 |
Consensus MFE | -18.30 |
Energy contribution | -19.30 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.13 |
Structure conservation index | 0.64 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8490275 102 + 20766785 CUGCAUUAUGUAUCUAUCAUCUAAUCGCCUGUUGUCAAAGACAGACGAUUGCGUGGAGCAUUCAUUCAGAUACAGCUACAAAUACAUAGCUACAGCUACUAG------------------ ..((.....((((((..(((.((((((.(((((......))))).)))))).)))(((......)))))))))(((((........)))))...))......------------------ ( -25.60) >DroSec_CAF1 2554 96 + 1 UUGCAUUAUGUAUCUAUCAUCUAAUCGCCUGUUGUCAAAGACAGACGAUUGCGUUGAGCAUCCAUUCAGAUACAG------AUACAUAGCUACAGCUACUAG------------------ ......(((((((((...(((((((((.(((((......))))).)))))((.....))........))))..))------)))))))((....))......------------------ ( -24.40) >DroSim_CAF1 2491 96 + 1 UUGCAUUAUGUAUCUAUCAUCUAAUCGCCUGUUGUCAAAGACAGACGAUUGCGUUGAGCAUCCAUUCAGAUACAG------AUACAUAGCUACAGCUACUAG------------------ ......(((((((((...(((((((((.(((((......))))).)))))((.....))........))))..))------)))))))((....))......------------------ ( -24.40) >DroEre_CAF1 61 105 + 1 UUGCAUUAUGUAUCUAUCAUCUAAUCGCCUGUUGUCAAAGACAGACGAUUGCGAGGAGCAUCCAUUCAGAU------ACAGCUAUGUACCAACAGCUACAGCCACAUAGCU--------- .(((((..(((((((....((((((((.(((((......))))).)))))).))((.....))....))))------)))...))))).....(((((........)))))--------- ( -28.80) >DroYak_CAF1 2557 120 + 1 UUGCAUUAUGUAUCUAUCAUCUAAUCGCCUGUUGUCAAAGACAGACGAUUGCGAGGAGCAUCCAUUCAGAUUCAGAUACAUCGACAUAGCUACAGCUACAAGCACAUAGCUGUAGCUACU .......(((((((((((.((((((((.(((((......))))).)))))).))((.....)).....)))..)))))))).....((((((((((((........)))))))))))).. ( -40.80) >consensus UUGCAUUAUGUAUCUAUCAUCUAAUCGCCUGUUGUCAAAGACAGACGAUUGCGUGGAGCAUCCAUUCAGAUACAG__ACA_AUACAUAGCUACAGCUACUAG__________________ ........(((((((.......(((((.(((((......))))).)))))((.....))........)))))))............((((....))))...................... (-18.30 = -19.30 + 1.00)
Location | 8,490,275 – 8,490,377 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -36.52 |
Consensus MFE | -22.94 |
Energy contribution | -23.78 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -4.18 |
Structure conservation index | 0.63 |
SVM decision value | 3.37 |
SVM RNA-class probability | 0.999095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8490275 102 - 20766785 ------------------CUAGUAGCUGUAGCUAUGUAUUUGUAGCUGUAUCUGAAUGAAUGCUCCACGCAAUCGUCUGUCUUUGACAACAGGCGAUUAGAUGAUAGAUACAUAAUGCAG ------------------...(((((....)))))(((((((((.((((((((((.....(((.....))).((((((((........)))))))))))))).)))).)))).))))).. ( -31.60) >DroSec_CAF1 2554 96 - 1 ------------------CUAGUAGCUGUAGCUAUGUAU------CUGUAUCUGAAUGGAUGCUCAACGCAAUCGUCUGUCUUUGACAACAGGCGAUUAGAUGAUAGAUACAUAAUGCAA ------------------........((((..(((((((------((((((((((.....(((.....))).((((((((........)))))))))))))).))))))))))).)))). ( -33.40) >DroSim_CAF1 2491 96 - 1 ------------------CUAGUAGCUGUAGCUAUGUAU------CUGUAUCUGAAUGGAUGCUCAACGCAAUCGUCUGUCUUUGACAACAGGCGAUUAGAUGAUAGAUACAUAAUGCAA ------------------........((((..(((((((------((((((((((.....(((.....))).((((((((........)))))))))))))).))))))))))).)))). ( -33.40) >DroEre_CAF1 61 105 - 1 ---------AGCUAUGUGGCUGUAGCUGUUGGUACAUAGCUGU------AUCUGAAUGGAUGCUCCUCGCAAUCGUCUGUCUUUGACAACAGGCGAUUAGAUGAUAGAUACAUAAUGCAA ---------(((((((((.(..........).)))))))))((------(((((...((.....))((..((((((((((........)))))))))).))...)))))))......... ( -33.80) >DroYak_CAF1 2557 120 - 1 AGUAGCUACAGCUAUGUGCUUGUAGCUGUAGCUAUGUCGAUGUAUCUGAAUCUGAAUGGAUGCUCCUCGCAAUCGUCUGUCUUUGACAACAGGCGAUUAGAUGAUAGAUACAUAAUGCAA .((((((((((((((......))))))))))))))((..(((((((((.((((((.....(((.....))).((((((((........))))))))))))))..)))))))))...)).. ( -50.40) >consensus __________________CUAGUAGCUGUAGCUAUGUAU_UGU__CUGUAUCUGAAUGGAUGCUCCACGCAAUCGUCUGUCUUUGACAACAGGCGAUUAGAUGAUAGAUACAUAAUGCAA .....................(((((....)))))...........((((((((.......((.....))((((((((((........))))))))))......))))))))........ (-22.94 = -23.78 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:23 2006