Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,490,116 – 8,490,235 |
Length | 119 |
Max. P | 0.682995 |
Location | 8,490,116 – 8,490,235 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.12 |
Mean single sequence MFE | -34.20 |
Consensus MFE | -25.16 |
Energy contribution | -26.41 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.43 |
Structure conservation index | 0.74 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8490116 119 + 20766785 UAUCCGCAAUCGCUGCUGUCUCCAUUAAAGAUCCAUCUGGGCUUGUCAGAA-UGGCUGGCUGGUUCCGCGGAGCAGCAGCUACCACUUACUUUCAGCCAGACAGCGACGAAUCGCAAUCU .....((..(((.(((((((.(((((.(((.(((....)))))).....))-))).(((((((....(.(((((....))).)).)......)))))))))))))).)))...))..... ( -39.00) >DroSec_CAF1 2402 114 + 1 NNNNNNNNNNNNNCGCUGUUCCCAUUAAAGAUCCAUCUGGGCUGGUCAGAAAAGGCUGGCUGGUU------GGCAGCAGCUACCACUUACUUUCAGCCAGACAGCGACGAAUCGCAAUCU .............(((((((........(((....))).((((((((((......)))))((((.------(((....)))))))........))))).))))))).............. ( -30.60) >DroSim_CAF1 2338 113 + 1 UAUCAGCCAUCGCUGCUGUUCCCAUUAAAGAUCCAUCUGGGCUUGUCAGAA-UGGCUGGCUGGUU------GGCAGCAGCUACCACUUACUUUCAGCCAGACAGCGACGAAUCGCAAUCU .....((..(((.((((((..(((((.(((.(((....)))))).....))-)))((((((((.(------(((....))))..........)))))))))))))).)))...))..... ( -34.20) >DroYak_CAF1 2416 108 + 1 UAUCAGCCAUCGCUGCUGUGCCCAUUAAAGAUCCAUCUGGGCCUGUCAGAA-UGGUUGGCUGG-----------AGCAGCUACCACUUACUUUCAGCCAGACAGCGACGAAUCGCAAUCU .....((..(((.((((((..(((((..((..((....))..)).....))-)))((((((((-----------((.((......))...)))))))))))))))).)))...))..... ( -33.00) >consensus UAUCAGCCAUCGCUGCUGUUCCCAUUAAAGAUCCAUCUGGGCUUGUCAGAA_UGGCUGGCUGGUU______GGCAGCAGCUACCACUUACUUUCAGCCAGACAGCGACGAAUCGCAAUCU .........(((.((((((.............((((((((.....)))))..)))((((((((........(((....)))...........)))))))))))))).))).......... (-25.16 = -26.41 + 1.25)
Location | 8,490,116 – 8,490,235 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.12 |
Mean single sequence MFE | -38.70 |
Consensus MFE | -27.08 |
Energy contribution | -27.45 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -1.72 |
Structure conservation index | 0.70 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8490116 119 - 20766785 AGAUUGCGAUUCGUCGCUGUCUGGCUGAAAGUAAGUGGUAGCUGCUGCUCCGCGGAACCAGCCAGCCA-UUCUGACAAGCCCAGAUGGAUCUUUAAUGGAGACAGCAGCGAUUGCGGAUA ...(((((((.(((.((((((((((((....(..((((.(((....)))))))..)..)))))..(((-(.(((.......)))))))...........))))))).))))))))))... ( -46.30) >DroSec_CAF1 2402 114 - 1 AGAUUGCGAUUCGUCGCUGUCUGGCUGAAAGUAAGUGGUAGCUGCUGCC------AACCAGCCAGCCUUUUCUGACCAGCCCAGAUGGAUCUUUAAUGGGAACAGCGNNNNNNNNNNNNN .....((((((((((((((((.(((((........((((((...)))))------)......)))))......)).))))...)))))))).....((....)))).............. ( -31.04) >DroSim_CAF1 2338 113 - 1 AGAUUGCGAUUCGUCGCUGUCUGGCUGAAAGUAAGUGGUAGCUGCUGCC------AACCAGCCAGCCA-UUCUGACAAGCCCAGAUGGAUCUUUAAUGGGAACAGCAGCGAUGGCUGAUA ((((.((((....)))).))))(((((........((((((...)))))------)..)))))(((((-(((((.....((((.............)))).....))).))))))).... ( -39.42) >DroYak_CAF1 2416 108 - 1 AGAUUGCGAUUCGUCGCUGUCUGGCUGAAAGUAAGUGGUAGCUGCU-----------CCAGCCAACCA-UUCUGACAGGCCCAGAUGGAUCUUUAAUGGGCACAGCAGCGAUGGCUGAUA ..........(((((((((.(((.(((..((..((((((.((((..-----------.))))..))))-))))..)))(((((.............))))).))))))))))))...... ( -38.02) >consensus AGAUUGCGAUUCGUCGCUGUCUGGCUGAAAGUAAGUGGUAGCUGCUGCC______AACCAGCCAGCCA_UUCUGACAAGCCCAGAUGGAUCUUUAAUGGGAACAGCAGCGAUGGCUGAUA ....(((((((((((((((((((((((......(((....)))((((...........)))))))))).....))).)))...)))))))).....((....)))))............. (-27.08 = -27.45 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:22 2006