Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,484,265 – 8,484,385 |
Length | 120 |
Max. P | 0.984762 |
Location | 8,484,265 – 8,484,385 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.73 |
Mean single sequence MFE | -38.42 |
Consensus MFE | -33.90 |
Energy contribution | -34.46 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.81 |
Structure conservation index | 0.88 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8484265 120 - 20766785 CGCCGCCCAAUAAGGGUAACAGUUCGAACAACUAUCUGAAUCUGGCGCUGUUCAAUUCCAGUAAGUGCAAGGGCAAGGAGGCGCCUCCUGGCUGCCGCACUCCCAUGUACACGCCAAAUU ....((((.....))))..(((.............)))....((((((((........))))..(((((.(((..((..((((((....))).)))...))))).)))))..)))).... ( -37.52) >DroSec_CAF1 8538 120 - 1 CGCCGCCCAAUAAGGGUAACAGUUCGAACAAUUAUCUGAAUCUGGCGCUGUUCAAUUCCAGUAAGUGCAAGGGCAAGGAGGCGCCUCCUGGCUGCCGCACUCCCAUGUACACGCCAAACU ....((((.....))))..(((.............)))....((((((((........))))..(((((.(((..((..((((((....))).)))...))))).)))))..)))).... ( -37.52) >DroSim_CAF1 8558 120 - 1 CGCCGCCCAAUAAGGGUAACAGUUCGAACAAUUAUCUGAAUCUGGCGCUGUUCAAUUCCAGUAAGUGCAAGGGCAAGGAGGCGCCUCCGGGCUGCCGCACUCCCAUGUACACGCCAAACU ....((((.....))))..(((.............)))....((((((((........))))..(((((.(((..((..((((((....))).)))...))))).)))))..)))).... ( -37.32) >DroEre_CAF1 8773 117 - 1 CG---CCCAACAAGGGUAACAGCUCUAACAACUAUCUCAAUCUGGCGCUGUUCAAUUCCAGCAAGUGCAAGGGCAAGGAGGCGCCACCUGGCUGCCGCACGCCCAUGUACACGCCCAAUU .(---(((.....))))..........................(((((((........))))..(((((.((((...(.((((((....))).))).)..)))).)))))..)))..... ( -41.10) >DroYak_CAF1 8988 117 - 1 CG---CCCAACAAGGGUAACAGUUCCAACAACUAUCUCAAUCUGGCGCUGUUCAACUCCAGCAAGUGCAAGGGCAAGGAGGCGCCACCUGGCUGCCGCACGCCCAUGUACACACCAAAUU .(---(((.....))))((((((.(((...............))).))))))............(((((.((((...(.((((((....))).))).)..)))).))))).......... ( -38.66) >consensus CGCCGCCCAAUAAGGGUAACAGUUCGAACAACUAUCUGAAUCUGGCGCUGUUCAAUUCCAGUAAGUGCAAGGGCAAGGAGGCGCCUCCUGGCUGCCGCACUCCCAUGUACACGCCAAAUU ....((((.....)))).........................((((((((........))))..(((((.(((....(.((((((....))).))).)...))).)))))..)))).... (-33.90 = -34.46 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:18 2006