Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,483,642 – 8,483,754 |
Length | 112 |
Max. P | 0.947209 |
Location | 8,483,642 – 8,483,754 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 93.66 |
Mean single sequence MFE | -47.72 |
Consensus MFE | -45.34 |
Energy contribution | -45.10 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.21 |
Mean z-score | -1.39 |
Structure conservation index | 0.95 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8483642 112 + 20766785 AUGCUGCGGCGAAGGAAUAGCUUUGGAUGGUGGCGGCGGGGGCAACUUUGCGGCUAGAUGUCCUGGAACGGCAGCAGGUGGUGACUGCCGUUUCUGAGCCUCCUUGGCAGCC .....((.((.(((((...((((.(((((.((((.((((((....)))))).))))..))))).((((((((((((.....)).)))))))))).)))).))))).)).)). ( -53.00) >DroSec_CAF1 7921 112 + 1 AUGCUGCGGCGAAGGAAUAGCUUUGGAUGGUGGCGGCGGGGGCAACUUUGCGGCUAGAUGUCCUGGAACGGUAGCAGGUGGUGACUGUCGUUUCUGAGCCUCCUUGGCAGCC .....((.((.(((((...((((.(((((.((((.((((((....)))))).))))..))))).((((((..((((.....)).))..)))))).)))).))))).)).)). ( -46.40) >DroSim_CAF1 7941 112 + 1 AUGCUGCGGUGAAGGAAUAGCUUUGGAUGGUGGCGGCGGGGGCAACUUUGCGGCUAGAUGUCCUGGAACGGCAGCAGGUGGGGACUGUCGUUUCUGAGCCUCCUUGGCAGCC ..(((((....(((((...((((.(((((.((((.((((((....)))))).))))..))))).(((((((((((.......).)))))))))).)))).))))).))))). ( -48.70) >DroEre_CAF1 8156 112 + 1 AUGCUGCGGCGAAGGAAUAGCUUUCGAUGGUGGCGGUGGUGGCAACUUUGCGGCCAGAGGUCCCGGGCCGGCAGCAGGUGGUGAUUGCCGUUUUUGAGCCUCCUUGGCAGCC ..(((((..((((((.....))))))..((((((((..((.((..((((((((((...(....).)))).)))).))...)).))..))))).....)))......))))). ( -44.20) >DroYak_CAF1 8371 112 + 1 AUGUUGCGGCGAAGGAAUAGCUUUGGAUGGUGGCGGCGGCGGCAACUUUGCGGCCAGAGGUCCUGGACCGGCAGCAGGUGGUGACUGCCGUUUCUGAGCCUCCUUGGCAGCC .....((.((.(((((...((((.((((..((((.((((.(....).)))).))))...)))).(((.((((((((.....)).)))))).))).)))).))))).)).)). ( -46.30) >consensus AUGCUGCGGCGAAGGAAUAGCUUUGGAUGGUGGCGGCGGGGGCAACUUUGCGGCUAGAUGUCCUGGAACGGCAGCAGGUGGUGACUGCCGUUUCUGAGCCUCCUUGGCAGCC .....((.((.(((((...((((.((((..((((.((((((....)))))).))))...)))).((((((((((((.....)).)))))))))).)))).))))).)).)). (-45.34 = -45.10 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:17 2006