Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,483,368 – 8,483,492 |
Length | 124 |
Max. P | 0.997135 |
Location | 8,483,368 – 8,483,464 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 92.60 |
Mean single sequence MFE | -37.80 |
Consensus MFE | -27.76 |
Energy contribution | -28.32 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.91 |
Structure conservation index | 0.73 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562392 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8483368 96 + 20766785 CACCAGUCGAAUUUGCCACUCCUGCAGGUCCGCCCUUGGGCGACUUGUUUUCACUGGCAGUUGGUGAAUGACUGCCCAUCUGGGCGGCGGUUCGCU ............((((((.....(((((((.(((....))))))))))......))))))..(((((((..((((((....))))))..))))))) ( -41.40) >DroSec_CAF1 7647 96 + 1 CCCCAGCCGAAUUUGCCACUCCUGCAGCUCCUCCCUUGGGCGAUUUGUUUUCACUGGCAGUUGGUGAAUGACUGCCCAUCUGGGCGGCGGUUCGCU ....(((((.(((..(((...((((.((.((......))))((.......))....)))).)))..)))..((((((....))))))))))).... ( -33.40) >DroSim_CAF1 7666 96 + 1 CCCCAGCCGAAUUUGCCACUCCUGCAGCUCCUCCCUUGGGCGAUUUGUUUUCACUGGCAGUUGGUGAAUGACUGCCCAUCUGGGCGGCGGUUCGCU ....(((((.(((..(((...((((.((.((......))))((.......))....)))).)))..)))..((((((....))))))))))).... ( -33.40) >DroEre_CAF1 7882 96 + 1 CCGCCACCGAAUUCGCAACUCCGGCAGCGCUGCCCUUGGGCGAUUUGUUUUCACUGGCAGUUGGCGAAUGACUGCCCAUCUGGGCGGCGGUUCGCU (((((.....((((((((((((((.((((.((((....))))...))))....)))).)))).))))))....((((....)))))))))...... ( -39.70) >DroYak_CAF1 8097 96 + 1 CCGCCGCCGAAUUUGCCACUCCAGCUGCUCCUCCCUUGGGCGAUUUGUUUUCACUGGCAGUUGGCGAAUGACUGCCCAUCUGGGCGGCGGUUCGCU ..((((((..((((((((((((((..((.((......))))((.......)).)))).)).))))))))....((((....))))))))))..... ( -41.10) >consensus CCCCAGCCGAAUUUGCCACUCCUGCAGCUCCUCCCUUGGGCGAUUUGUUUUCACUGGCAGUUGGUGAAUGACUGCCCAUCUGGGCGGCGGUUCGCU ............((((((.....((((.((..((....)).)).))))......))))))..(((((((..((((((....))))))..))))))) (-27.76 = -28.32 + 0.56)
Location | 8,483,384 – 8,483,492 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 66.36 |
Mean single sequence MFE | -39.07 |
Consensus MFE | -24.31 |
Energy contribution | -25.73 |
Covariance contribution | 1.43 |
Combinations/Pair | 1.17 |
Mean z-score | -1.76 |
Structure conservation index | 0.62 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8483384 108 + 20766785 CACUCCUGCAGGUCCGCCCUUGGGCGACUUGUUUUCACUGGCAGUUGGUGAAUGACUGCCCAUCUGGGCGGCGGUUCGCUUCUCCGGGCUGGGUGUCUUCUUAUCCAC .......(((((((.(((....)))))))))).....((((.((..(((((((..((((((....))))))..))))))).))))))..((((((......)))))). ( -45.90) >DroGri_CAF1 10560 84 + 1 ---------CUGCGUUGCUUUCGGUGAUUUAUUCUCACCAGAAUUGGGCGAAUGG---------------GCGCUACGCUUCUCGGGACUGGGCGUCUUCUUGUCCGA ---------..........((((((((.......))))).)))((((((((..((---------------(((((...((.....))....)))))))..)))))))) ( -27.20) >DroEre_CAF1 7898 108 + 1 AACUCCGGCAGCGCUGCCCUUGGGCGAUUUGUUUUCACUGGCAGUUGGCGAAUGACUGCCCAUCUGGGCGGCGGUUCGCUUCUCCGGACUGGGUGUCUUCUUAUCCGC ...(((((((((((((((....)))((.......))...))).))))((((((..((((((....))))))..))))))....)))))..(((((......))))).. ( -44.10) >consensus _ACUCC_GCAGGCCUGCCCUUGGGCGAUUUGUUUUCACUGGCAGUUGGCGAAUGACUGCCCAUCUGGGCGGCGGUUCGCUUCUCCGGACUGGGUGUCUUCUUAUCCGC ..............((((....))))...........((((.((..(((((((..((((((....))))))..))))))).))))))..((((((......)))))). (-24.31 = -25.73 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:15 2006