Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,566,094 – 1,566,202 |
Length | 108 |
Max. P | 0.914781 |
Location | 1,566,094 – 1,566,202 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.71 |
Mean single sequence MFE | -24.09 |
Consensus MFE | -15.02 |
Energy contribution | -15.80 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.12 |
Mean z-score | -2.64 |
Structure conservation index | 0.62 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1566094 108 - 20766785 CAUUUCUCCAACUGCUCAUUCAAUAACACGAACUACGACCUUUCCAACCUCCUCUCUGACAUCACCCCUUUGACUGGCUACACGCCAG--------UGGG-UC---UCACUGAGGAGGCU ...............................................(((((((..(((....((((.....((((((.....)))))--------))))-).---)))..))))))).. ( -28.60) >DroSec_CAF1 2006 108 - 1 CAUUUCUCCAACUACUCAUUCAAUAACACGAACUACGACCUUUCCAACCUCCUCUCUGACAUCACCCCUCUGACUGGCUACACGCCAG--------UGGG-UC---UCACUGAGGAGGCU ...............................................(((((((..(((....((((.....((((((.....)))))--------))))-).---)))..))))))).. ( -28.60) >DroSim_CAF1 1390 108 - 1 CAUUUCUCCAACCACUCAUUCAAUAACACGAACUACAACCUUUCCAACCUCCUCUCUGACAUCACCCCCCUGACUGGUUACACGCCAG--------UGGG-UC---CCACUGAGGAGGCU ...............................................(((((((..((.....((((.....((((((.....)))))--------))))-).---.))..))))))).. ( -24.30) >DroEre_CAF1 1328 108 - 1 CAUUUCUCCAGCUACUCAUUCAACAACACGAACUACGACCUUUACAACCUCCUCUCUGACAUCACCCCGCUAACUGGCUACACGCCCG--------UGGG-UC---UCACUGAGGAGGCG ...............................................(((((((..(((....((((((......(((.....)))))--------.)))-).---)))..))))))).. ( -24.20) >DroYak_CAF1 1318 108 - 1 CAUUUUUCCAACUACUCAUUCAAUAACACGAACUACGACCUUUACAACCUCCUCUCUGACAUCACCCCUCUGACUGGCUACACGCCCG--------UGGG-UC---UCACGGAGGAUGCU .................................................((((((.(((....((((.....((.(((.....))).)--------))))-).---))).)))))).... ( -19.20) >DroAna_CAF1 1294 120 - 1 CCACACUCACACUUGUCGUUCAACCCAACAAAAUACGAAGUGACCAGCCUCCUCUCCGAUGUCACCCCCUUAACAGGGUACACUCCAAACUCAGCGCAGGCUCAGAGCACCGAAGAUGAC .....(((.((((..((((...............))))))))...((((((((....(((((.((((........))))))).)).......)).).)))))..)))............. ( -19.66) >consensus CAUUUCUCCAACUACUCAUUCAAUAACACGAACUACGACCUUUCCAACCUCCUCUCUGACAUCACCCCUCUGACUGGCUACACGCCAG________UGGG_UC___UCACUGAGGAGGCU ...............................................(((((((..(((......(((.......(((.....)))...........)))......)))..))))))).. (-15.02 = -15.80 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:04 2006