Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,481,677 – 8,481,775 |
Length | 98 |
Max. P | 0.920132 |
Location | 8,481,677 – 8,481,775 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 91.10 |
Mean single sequence MFE | -35.42 |
Consensus MFE | -32.12 |
Energy contribution | -31.72 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.49 |
Structure conservation index | 0.91 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8481677 98 + 20766785 CGACAUUUUUC-----UUUCCCCGUCGC-CAGGCGUU-CAUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC ((((.......-----(((((((((.((-(((...((-(((...)))))..)))))((((..(...((((((...)).)))).)..))))))))))))))))).. ( -35.01) >DroSec_CAF1 5989 96 + 1 CGACAUUUU--------UUCUCCGUCGC-CAGGCAUUCCAUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC ((((....(--------((((((((.((-(((...((((((...)))))).)))))((((..(...((((((...)).)))).)..))))))))))))))))).. ( -35.60) >DroSim_CAF1 6013 96 + 1 CGACAUUUU--------UUCCCCGUCGC-CAGGCAUUCCAUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC ((((....(--------((((((((.((-(((...((((((...)))))).)))))((((..(...((((((...)).)))).)..))))))))))))))))).. ( -38.60) >DroEre_CAF1 6228 99 + 1 CGACAUUUUUUUUGCUUUUCCCCGUCGC-CAGAC-----AUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC ((((............((((((((((..-..)))-----...((((....))))((((((..(...((((((...)).)))).)..))))))))))))))))).. ( -33.40) >DroYak_CAF1 6409 93 + 1 CGACAUUUUU-------UUCCCCGUCGCCCAGAC-----GUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC ((((.....(-------(((((((((.....)))-----...((((....))))((((((..(...((((((...)).)))).)..))))))))))))))))).. ( -34.50) >consensus CGACAUUUUU_______UUCCCCGUCGC_CAGGC_UU_CAUUCAGUGGGAAUUGGCAGAUUAGAAACGCUCGAAACGCAGCGGUCGGUCUGCGGGGAAGGUCGAC ((((.............(((((((((.....)))........((((....))))((((((..(...((((((...)).)))).)..)))))))))))).)))).. (-32.12 = -31.72 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:08 2006