Locus 2297

Sequence ID 2R_DroMel_CAF1
Location 8,467,780 – 8,467,879
Length 99
Max. P 0.809446
window3781

overview

Window 1

Location 8,467,780 – 8,467,879
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 92.20
Mean single sequence MFE -26.45
Consensus MFE -23.82
Energy contribution -23.98
Covariance contribution 0.16
Combinations/Pair 1.11
Mean z-score -1.32
Structure conservation index 0.90
SVM decision value 0.64
SVM RNA-class probability 0.809446
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8467780 99 + 20766785
GGCGCCUGGAAAGAGCAAAGAAAGGCGGAGAACUGUAGAAGUCACUCAAUGCUCUUUGCUUUUCUUCCGGCUAAUGUGCACAGAGAAAAAAAUCGCAAU
.(((((.((((((((((((((...((.(((.(((.....)))..)))...))))))))))))..)))))))...........((........))))... ( -27.50)
>DroSec_CAF1 11410 98 + 1
GGCGCCUGGAAAGGGCAAAGAAAGGCGGAGAACUGUAGAAGUCACUCAAUGCUCUUUGCUUUUCUUCCGGCUAAUGUGCACAGAGAAA-AAAUCACAAU
.((((((((((((((((((((...((.(((.(((.....)))..)))...))))))))))))..)))))).....)))).........-.......... ( -26.10)
>DroSim_CAF1 11772 99 + 1
GCCGCCUGGAAAGAGCAAAGAAAGGCGGAGAACUGUAGAAGUCACUCAAUGCUCUUUGCUUUUCUUCCGGCUAAUGUGCACAGAGAAAAAAAUCACCAU
...(((.((((((((((((((...((.(((.(((.....)))..)))...))))))))))))..)))))))............................ ( -25.20)
>DroEre_CAF1 12751 98 + 1
GGCGCCUGGAAGGAGCAAAGAAAGGCGGAGAACUGUGGAAGUCACUCAAUGCACUUUGCUUUUUUCCCGGCCAAUGUGCACAGAGAAA-AAAUCACGUU
.(.(((.(((((((((((((....((.(((.(((.....)))..)))...)).)))))).))))))).))))((((((..........-....)))))) ( -26.94)
>DroYak_CAF1 12132 98 + 1
GGCGCCUGGAAAUAGCAAAGAAAGGCGGAGAACCGUAAAAGUCACUCAAUGCUCUUUGCUGUUUUUCCGGCUAGUGUGCACAGAGAAA-AAAUCGCAAU
.(((((.((((((((((((((...((((....))))....((........))))))))))))..)))))))..((....)).......-.....))... ( -26.50)
>consensus
GGCGCCUGGAAAGAGCAAAGAAAGGCGGAGAACUGUAGAAGUCACUCAAUGCUCUUUGCUUUUCUUCCGGCUAAUGUGCACAGAGAAA_AAAUCACAAU
.((((((((((((((((((((...((.(((.(((.....)))..)))...)))))))))))))..))))).....)))).................... (-23.82 = -23.98 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:07 2006