Locus 2295

Sequence ID 2R_DroMel_CAF1
Location 8,465,179 – 8,465,275
Length 96
Max. P 0.505730
window3775

overview

Window 5

Location 8,465,179 – 8,465,275
Length 96
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 87.49
Mean single sequence MFE -30.38
Consensus MFE -25.36
Energy contribution -26.08
Covariance contribution 0.72
Combinations/Pair 1.17
Mean z-score -1.37
Structure conservation index 0.83
SVM decision value -0.05
SVM RNA-class probability 0.505730
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8465179 96 - 20766785
ACCACCACCGCCUGCAGGUGGUGUGUUGGUCAUGCCACCUCCUCCUCCAUCGUUCACUCCAGCUGAGGU------GGCGCCACCGCCAUCAUUUGUUCCCGC
..(((((((.......)))))))((.((((..(((((((((.......................)))))------))))..)))).)).............. ( -31.70)
>DroSec_CAF1 8743 99 - 1
ACCACCACCGCCUGCAGGUGGAGUGCUGGUCAUGCCACCUCCUCCUCCAUCGUUCACUCCCGCUGAGGUCUCCGUGGC---ACCACCAUCAUAUGUUCCCGC
....(((((.......))))).(((.((((..((((((.....((((...((........))..)))).....)))))---)..)))).))).......... ( -31.40)
>DroSim_CAF1 9088 102 - 1
ACCACCACCGCCUGCAGGUGGAGUGCUGGUCAUGCCACCUCCUCCUCCAUCGUUCACUCCUGCUGAGGUCUCCGUGGCGCCACCACCAUCAUAUGUUCCCGC
....(((((.......))))).(((.((((..((((((.....((((....((........)).)))).....))))))..)))).)))............. ( -29.00)
>DroEre_CAF1 10237 97 - 1
-----CACCGCCUGCAGGUGGAGUGCUGGUCAUGCCACCUCCGCCACCAUCGUUCACUCCUGCUGAGGUCUCCGUGGCGCCACCACCUUCAUUUGUUCCCGC
-----...((...((((((((((.(.((((..((((((....(((..((.((........)).)).)))....))))))..)))))))))))))))...)). ( -28.30)
>DroYak_CAF1 9337 97 - 1
-----CACCGCCAGCGGGUGGAGUGCUGGUCAUGCCGCCUCCUCCUCCAUCGUUCACUCCUGCUGAGGUCACCGCGGCGCCACCACCUUCAUUUGUUCCUGC
-----....((.(((((((((((.(.((((..((((((.....((((....((........)).)))).....))))))..))))))))))))))))...)) ( -31.50)
>consensus
ACCACCACCGCCUGCAGGUGGAGUGCUGGUCAUGCCACCUCCUCCUCCAUCGUUCACUCCUGCUGAGGUCUCCGUGGCGCCACCACCAUCAUUUGUUCCCGC
........((...((((((((((.(.((((..((((((.....((((....((........)).)))).....))))))..)))))))))))))))...)). (-25.36 = -26.08 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:01 2006