Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,457,702 – 8,457,808 |
Length | 106 |
Max. P | 0.981930 |
Location | 8,457,702 – 8,457,808 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 72.87 |
Mean single sequence MFE | -28.36 |
Consensus MFE | -19.84 |
Energy contribution | -21.37 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.70 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8457702 106 + 20766785 UCCAACCACAAGAGUGGCCACGGCCUGGAGCAUUGUGCCCACACGAGCUCCGGUUGCCUGGAAUAAGGAAAA----AGCGUUAGAUAUUUAAACAUAU----AUAGUAAAAAGC-- (((..((((....))))(((.((((((((((.(((((....))))))))))))..)))))).....)))...----.((.(((.((((........))----))..)))...))-- ( -33.10) >DroSec_CAF1 1373 94 + 1 UCCAACCACAAGAGUGGCCACAGCCUGGAGCAUUGUGCCCACACGAGCUCCGGUAGCCUGGAAUAUGGAAAA----AACGUUAGAUAUUUAAACAAAU------------------ ((((.((((....))))(((..(((((((((.(((((....))))))))))))..)).)))....))))...----......................------------------ ( -28.30) >DroSim_CAF1 1370 106 + 1 UCCAACCACAAGAGUGGCCACGGCCUGGAGCAUUGUGCCCACACGAGCUCCGGUUGCCUGGAAUAUGGAGAC----AGCGUUAGAUAUUUAAACAAAU----AAAGCAAAAAGC-- ((((.((((....))))(((.((((((((((.(((((....))))))))))))..))))))....))))...----.((.(((..............)----)).)).......-- ( -33.54) >DroEre_CAF1 1393 111 + 1 UCCAACCACAAGAGUGGCCACGGCCUGGAGCAUGGUGCCCACACGAGCUCCGGUUGCCUGGAAUAUAGAAA-----AAUGUUAGAAAUUUAAAAACAUAUAUAUAGUCAAUAGUCA ((((.((((....))))....((((((((((.(.(((....))).))))))))..)))))))(((((....-----.(((((...........))))).)))))............ ( -28.70) >DroYak_CAF1 1386 84 + 1 UCCAACCACCAGAGUGGCCACAGCCUGGAGCAUGGUGCCCACACGAGCUCCGGUGGCCUGGAAUAUGGAGA-----AACGUUAGUGAUU--------------------------- ((((.(((((.....(((....))).(((((.(.(((....))).)))))))))))..)))).........-----.............--------------------------- ( -29.20) >DroAna_CAF1 1368 89 + 1 GCCCACCACCAAAGUGGCCACGGCCUGCAACAUGGUUCCAACACGAGCUCCAGUGGCCUAAGAGAUAGAAUUCGUAAAUAG--GAGAUUCA------------------------- ........((.....((((((((..........(((((......))))))).)))))).....((......)).......)--).......------------------------- ( -17.30) >consensus UCCAACCACAAGAGUGGCCACGGCCUGGAGCAUGGUGCCCACACGAGCUCCGGUUGCCUGGAAUAUGGAAA_____AACGUUAGAUAUUUAAACA_AU__________________ (((..((((....))))(((.((((((((((.(.(((....))).))))))))..)))))).....)))............................................... (-19.84 = -21.37 + 1.53)
Location | 8,457,702 – 8,457,808 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 72.87 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -22.20 |
Energy contribution | -22.23 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.20 |
Mean z-score | -0.77 |
Structure conservation index | 0.81 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8457702 106 - 20766785 --GCUUUUUACUAU----AUAUGUUUAAAUAUCUAACGCU----UUUUCCUUAUUCCAGGCAACCGGAGCUCGUGUGGGCACAAUGCUCCAGGCCGUGGCCACUCUUGUGGUUGGA --............----.............((((((...----...........((((((....(((((..(((....)))...)))))..))).))).(((....))))))))) ( -27.30) >DroSec_CAF1 1373 94 - 1 ------------------AUUUGUUUAAAUAUCUAACGUU----UUUUCCAUAUUCCAGGCUACCGGAGCUCGUGUGGGCACAAUGCUCCAGGCUGUGGCCACUCUUGUGGUUGGA ------------------......................----...(((......(((.((...(((((..(((....)))...))))))).))).((((((....))))))))) ( -26.00) >DroSim_CAF1 1370 106 - 1 --GCUUUUUGCUUU----AUUUGUUUAAAUAUCUAACGCU----GUCUCCAUAUUCCAGGCAACCGGAGCUCGUGUGGGCACAAUGCUCCAGGCCGUGGCCACUCUUGUGGUUGGA --.......((.((----(..(((....)))..))).)).----...((((....((((((....(((((..(((....)))...)))))..))).)))((((....)))).)))) ( -28.80) >DroEre_CAF1 1393 111 - 1 UGACUAUUGACUAUAUAUAUGUUUUUAAAUUUCUAACAUU-----UUUCUAUAUUCCAGGCAACCGGAGCUCGUGUGGGCACCAUGCUCCAGGCCGUGGCCACUCUUGUGGUUGGA ...........((((...(((((...........))))).-----....)))).(((((((....(((((..(((....)))...)))))..)))...(((((....))))))))) ( -27.50) >DroYak_CAF1 1386 84 - 1 ---------------------------AAUCACUAACGUU-----UCUCCAUAUUCCAGGCCACCGGAGCUCGUGUGGGCACCAUGCUCCAGGCUGUGGCCACUCUGGUGGUUGGA ---------------------------.............-----.........(((((.(((((((((....((.((((.....))))))(((....))).)))))))))))))) ( -32.10) >DroAna_CAF1 1368 89 - 1 -------------------------UGAAUCUC--CUAUUUACGAAUUCUAUCUCUUAGGCCACUGGAGCUCGUGUUGGAACCAUGUUGCAGGCCGUGGCCACUUUGGUGGUGGGC -------------------------.......(--((...........(((.....)))(((((..((((.((((.......))))..)).(((....)))..))..)))))))). ( -23.30) >consensus __________________AU_UGUUUAAAUAUCUAACGUU_____UUUCCAUAUUCCAGGCAACCGGAGCUCGUGUGGGCACAAUGCUCCAGGCCGUGGCCACUCUUGUGGUUGGA ......................................................(((((((....(((((..(((....)))...)))))..)))...(((((....))))))))) (-22.20 = -22.23 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:00 2006