Locus 2293

Sequence ID 2R_DroMel_CAF1
Location 8,446,285 – 8,446,378
Length 93
Max. P 0.592673
window3772

overview

Window 2

Location 8,446,285 – 8,446,378
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 77.28
Mean single sequence MFE -31.38
Consensus MFE -16.44
Energy contribution -18.63
Covariance contribution 2.20
Combinations/Pair 1.23
Mean z-score -1.78
Structure conservation index 0.52
SVM decision value 0.12
SVM RNA-class probability 0.592673
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8446285 93 - 20766785
GUCCUCGCUGUGGAGAUAGCUAUGCUGUCUAUCGCCUAGCCAAUAGCUGGGCGAGAAUUCCGCAUCCUGUUUGGGUUUUAGCGAGUAAUCGCU
...(((((((((((((((((...))))))..(((((((((.....)))))))))....)))))((((.....))))...))))))........ ( -40.90)
>DroPse_CAF1 34588 93 - 1
AUCCUCGCUCUGCAGAUACGUGUGUUGUCUCUCGUUCAGCCAAUAGCUGGAGGAAUACUCCGUCUCUGGCUUGUGCUUCAGCGAGUAGUCGCU
...((((((..(((((.(((.(.(....).).)))))(((((..((.(((((.....))))).)).)))))..)))...))))))........ ( -29.00)
>DroSim_CAF1 9658 93 - 1
GUCCUCGCUGUGGAGAUAGCUAUGCUGUCUAUCGCCUAGCCAAUAGCGGGGCGAGAAUUCCGCAUCCUGCUUGGGUUUUAGCGAGUAAUCGCU
...(((((((((((((((((...))))))..((((((.((.....)).))))))....)))))((((.....))))...))))))........ ( -36.70)
>DroEre_CAF1 14698 93 - 1
GUCCUCGCUAUGGAGGUAGCUAUGCUGUCUUUCGCCUAGCCAAUAGCUGGGCGAGUAUUCCGCAUCCUGUUUGGGUUUUAGCGAGUAAUCGCU
...(((((((.((((..(((...)))..).((((((((((.....))))))))))...)))..((((.....))))..)))))))........ ( -35.90)
>DroAna_CAF1 9869 81 - 1
GUCCUCGCUCUGCAGGUAGCCAUGCC------------GCCAGUAGCUCGGCGAAUAUUCCGCACCCGGUUUGGGUUUCAACGAAUAGUCACU
(((...((((((..((((....))))------------..))).)))..)))((.(((((...((((.....))))......))))).))... ( -21.00)
>DroPer_CAF1 33138 93 - 1
AUCCUCGCUCUGCAGAUACGUGUGUUGUCUCUCGUUCAGCCAAUAGCUGGUGGAAUACUCCGUCUCUGGCUUGUGCUUCAGCGAGUAGUCGCU
...((((((..(((((.(((.(.(....).).)))))(((((..((.(((.(.....).))).)).)))))..)))...))))))........ ( -24.80)
>consensus
GUCCUCGCUCUGCAGAUAGCUAUGCUGUCUAUCGCCUAGCCAAUAGCUGGGCGAAUAUUCCGCAUCCGGCUUGGGUUUCAGCGAGUAAUCGCU
...((((((....(((((((...))))))).......((((...(((((((((.......)))..))))))..))))..))))))........ (-16.44 = -18.63 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:59 2006