Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,565,626 – 1,565,734 |
Length | 108 |
Max. P | 0.525099 |
Location | 1,565,626 – 1,565,734 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 86.07 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -26.08 |
Energy contribution | -27.00 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.21 |
Mean z-score | -1.64 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1565626 108 + 20766785 -UGAUCGGGCGGUGGUUUCUUUCCUGGACUUGGGCGCUUUAGCCAAGUCCGCUCUUGAAUUAGAGGUGGCCGAGAUUUUGGCAGUUACGUUGGGUAAUGGACUUUGCUU -.....((((((.((((..((.(((((((((((.(......))))))))).((((......))))...(((((....))))).........))).))..)))))))))) ( -33.10) >DroSec_CAF1 1538 108 + 1 -UGAUCGAGGGGAGGUUUCUUUCCUGGACUUGGUCGCUUUAGCCAAGUCCGCUCUUGAAUUAGAGGUGGCCGAGAUUUUGGCAGUCACCUUGGGUAACGGACUUUGCUU -...(((((((.(((.......)))(((((((((.......))))))))).)))))))....(((((((((((....)))))...))))))((((((......)))))) ( -38.10) >DroSim_CAF1 922 108 + 1 -UGAUCGGGGGGAGGUUUCUUUCCCGGACUUGGUCGCUUUAGCCAAGUCCGCUCUUGAAUUAGAGGUGGCCGAGAUUUUGGCAGUCACCUUGGGUAAUGGGCUUUGCUU -......(((..((....))..)))(((((((((.......)))))))))((((....((..(((((((((((....)))))...))))))..))...))))....... ( -42.50) >DroEre_CAF1 853 109 + 1 GUGAUCGUGGAGAGCUUUCUUUCCUGGACGUGGUCGCUUUAGCUAGGUUCAGUCUUGAACUAGAGGUGGCCGAGCUUUUGGCAGCCACCUUGGGUAAAGGACUUUGCUU (((((((.((((((....))))))......))))))).......((((..((((((..(((.((((((((...((.....)).)))))))).)))..))))))..)))) ( -39.60) >DroYak_CAF1 856 108 + 1 -UGAUCGAAGGGAAUUUUCUUUCCUAGACGGGGACGCUGUAGCUAAGUUAAGUCUUGAAUUAGAAGUGGCCGAAAUUUUGGCAGCCCCGUUGGGUAAUGGACUUUGCUG -........(((((......))))).(((((((.((((....((((.(((.....))).)))).))))(((((....)))))..))))))).(((((......))))). ( -32.10) >consensus _UGAUCGAGGGGAGGUUUCUUUCCUGGACUUGGUCGCUUUAGCCAAGUCCGCUCUUGAAUUAGAGGUGGCCGAGAUUUUGGCAGUCACCUUGGGUAAUGGACUUUGCUU ........((.((((((..((.(((((((((((.(......)))))))))............(((((((((((....)))))...))))))))).))..)))))).)). (-26.08 = -27.00 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:03 2006