Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,406,018 – 8,406,111 |
Length | 93 |
Max. P | 0.952426 |
Location | 8,406,018 – 8,406,111 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 92.16 |
Mean single sequence MFE | -28.18 |
Consensus MFE | -23.66 |
Energy contribution | -23.90 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.52 |
Structure conservation index | 0.84 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8406018 93 + 20766785 ----UCAAGAUUUUUCUUUCUGUGUGCCGAUUGCCCUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU ----..((((....)))).........((((.((((((((((((((..(((((...((....))..)).)))...))))))))))...)))))))). ( -28.40) >DroSec_CAF1 17399 97 + 1 AUAUGCAAGAUAUUUCUCUCUGUGUGCCGAUUGCCGUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU .(((((((((......))).)))))).((((.((((((((((((((..(((((...((....))..)).)))...)))))))))))...))))))). ( -29.20) >DroSim_CAF1 17034 97 + 1 AUAUGCAAGAUAUUUCUUUCUGUGUGCCGCUUGCCGUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU .((((((.((........)))))))).....(((((((((((((((..(((((...((....))..)).)))...)))))))))))...)))).... ( -28.30) >DroEre_CAF1 19245 97 + 1 AUAUGCAAUGAAUUUCUUUCUGUGUGCCGAUUGCCGUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGCUUUGUAUCUGUAUCUGGGCAUUGU ....(((..(((.....)))....)))((((.((((((((((((((..(((((...((....))..)).)))...)))))))))))...))))))). ( -28.90) >DroYak_CAF1 17064 97 + 1 AUAUGUCAUAAAUUUCUUUCCGUGUGCCGAUUGCCGCGCAGAUACAUCUGCUGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU ..(((((.............((((.((.....))))))((((((((..(((.((((((..........))))))..)))..)))))))))))))... ( -26.10) >consensus AUAUGCAAGAUAUUUCUUUCUGUGUGCCGAUUGCCGUGCAGAUACAUCUGCCGAUGCGUUUGCGACCGUGCGUUUUGUAUCUGUAUCUGGGCAUUGU ...............................(((((((((((((((..(((((...((....))..)).)))...)))))))))))...)))).... (-23.66 = -23.90 + 0.24)
Location | 8,406,018 – 8,406,111 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 92.16 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -19.86 |
Energy contribution | -20.06 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.85 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8406018 93 - 20766785 ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCAGGGCAAUCGGCACACAGAAAGAAAAAUCUUGA---- ....(((((.....((((((((....((.((((.((....))))))))...))))))))..))))).............((((....))))..---- ( -25.30) >DroSec_CAF1 17399 97 - 1 ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCACGGCAAUCGGCACACAGAGAGAAAUAUCUUGCAUAU ....((((......((((((((....((.((((.((....))))))))...))))))))...))))....(((...(((.(....).)))))).... ( -24.50) >DroSim_CAF1 17034 97 - 1 ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCACGGCAAGCGGCACACAGAAAGAAAUAUCUUGCAUAU ....((((......((((((((....((.((((.((....))))))))...))))))))...))))....(((...(((.(....).)))))).... ( -24.50) >DroEre_CAF1 19245 97 - 1 ACAAUGCCCAGAUACAGAUACAAAGCGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCACGGCAAUCGGCACACAGAAAGAAAUUCAUUGCAUAU ....((((......((((((((....((.((((.((....))))))))...))))))))...))))....(((....(((.....)))..))).... ( -22.70) >DroYak_CAF1 17064 97 - 1 ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCAGCAGAUGUAUCUGCGCGGCAAUCGGCACACGGAAAGAAAUUUAUGACAUAU ....((((((((((((..........((......))....((....))...))))))))...)))).(((.....)))................... ( -19.60) >consensus ACAAUGCCCAGAUACAGAUACAAAACGCACGGUCGCAAACGCAUCGGCAGAUGUAUCUGCACGGCAAUCGGCACACAGAAAGAAAUAUCUUGCAUAU ....((((......((((((((....((.((((.((....))))))))...))))))))...))))............................... (-19.86 = -20.06 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:33 2006