Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,564,562 – 1,564,660 |
Length | 98 |
Max. P | 0.696430 |
Location | 1,564,562 – 1,564,660 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 72.45 |
Mean single sequence MFE | -33.70 |
Consensus MFE | -21.31 |
Energy contribution | -23.09 |
Covariance contribution | 1.79 |
Combinations/Pair | 1.18 |
Mean z-score | -1.40 |
Structure conservation index | 0.63 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1564562 98 + 20766785 GGCCGCACCAGGCCCACGAUUCGUUUUGAAUAUCUCGCAAAACGUGGUGCAGGUGGGAGCCGGGCCACUGCUUUUGCACUGAGAGUUUAGUGCGCCGA ((((.((((..((((((.....((((((.........)))))))))).)).)))).).))).(((((((((((((.....))))))..)))).))).. ( -37.40) >DroSim_CAF1 15919 98 + 1 GGCCGCACCAGGCCCACGAUUCCUUUUGAAUAUCUCGCAAAACGUGGUGCAGGUGGGAGCCGGGCCACUGCUCUUGCACUGAGAGUUUAGUGCGCCGA ((((.((((..(((((((.....(((((.........)))))))))).)).)))).).))).(((((((((((((.....))))))..)))).))).. ( -39.70) >DroYak_CAF1 20367 85 + 1 GGCUCUACCAGGCUAACAUUUCUUUCUA-------------ACCGACUGCAGAUAGUGGCCGGGCAAAUUUUUCUGCACUGAGAGUUUGCUUCGCCGA (((....((.(((((..(((((..((..-------------...))..).))))..)))))))((((((((((.......))))))))))...))).. ( -24.00) >consensus GGCCGCACCAGGCCCACGAUUCCUUUUGAAUAUCUCGCAAAACGUGGUGCAGGUGGGAGCCGGGCCACUGCUUUUGCACUGAGAGUUUAGUGCGCCGA ((((.((((..(((((((........................))))).)).)))).).))).(((((((((((((.....))))))..)))).))).. (-21.31 = -23.09 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:01 2006