Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,400,378 – 8,400,474 |
Length | 96 |
Max. P | 0.505541 |
Location | 8,400,378 – 8,400,474 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 81.43 |
Mean single sequence MFE | -33.75 |
Consensus MFE | -21.45 |
Energy contribution | -22.14 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.17 |
Mean z-score | -1.51 |
Structure conservation index | 0.64 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8400378 96 + 20766785 -GGCAACUGC--AGCACACUAGUUGUCCCGCUCCCACCGCGGUCCAAUGACUGCCGUG-CGAGAGAGAUGGC--CCGAUACAAGAAAUUGCCAUUUUGUUUU -((((((((.--.......))))))))...(((.(((.((((((....)))))).)))-.))).((((((((--...............))))))))..... ( -31.06) >DroSec_CAF1 11399 96 + 1 -GGCAACUGC--AGCACACUAGUUGUCCCGCUCCCACAGCGGUCCAAUGACUGCCGUG-CGAGGGAGAUGGC--CCGAUACAAGAAAUUGCCAUUUUGUUUU -((((((((.--.......))))))))((.(((.(((.((((((....)))))).)))-.)))))(((((((--...............)))))))...... ( -32.16) >DroSim_CAF1 11372 96 + 1 -GGCAACUGC--AGCACACUAGUUGUCCCGCUCCCACAGCGGUCCAAUGACUGCCGUG-CGAGGGAGAUGGC--CCGAUACAAGAAAUUGCCAUUUUGUUUU -((((((((.--.......))))))))((.(((.(((.((((((....)))))).)))-.)))))(((((((--...............)))))))...... ( -32.16) >DroEre_CAF1 13586 96 + 1 -GGCAACUGC--AGCACACCAGUUGUCUCGCUCCCACUGCGCGCAGAUGACUGCCGUG-AGAGGGAGAUGGC--CCGAUGCAAGAAAUUGCCAUUUUGUUUU -((((((((.--.......))))))))...(((((.(((((.((((....))))))).-)).)))))..(((--..(((((((....))).))))..))).. ( -33.80) >DroYak_CAF1 11521 96 + 1 -GGCAACUGC--CGCACACCAGUCGUCUCGCUCCCGCUGCGGUCAUAUGACUGCCGUG-CGAGGGAGAUGGC--GCGAUGCAAGAAAAUGCCAUUUUGUUUU -(((....))--)(((.....((((((((.(((.(((.((((((....)))))).)))-.))).))))))))--....)))..................... ( -40.20) >DroMoj_CAF1 18190 97 + 1 UGGCGAACAGCGCACACACCAGUUGUCUCGCUCUGGCU-CAUGCAUGCGACGGUCGUGGUGAGCGAGACGGCAAUUGCUC---G-AAAUGCCAUUUUGUUUG (((((....(.(((.......((((((((((((..((.-...))..((.((....)).))))))))))))))...))).)---.-...)))))......... ( -33.10) >consensus _GGCAACUGC__AGCACACCAGUUGUCCCGCUCCCACUGCGGUCAAAUGACUGCCGUG_CGAGGGAGAUGGC__CCGAUACAAGAAAUUGCCAUUUUGUUUU .(((((...............((((((.(.(((..((.((((((....)))))).))...))).).))))))...............))))).......... (-21.45 = -22.14 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:30 2006