Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,397,611 – 8,397,731 |
Length | 120 |
Max. P | 0.676558 |
Location | 8,397,611 – 8,397,731 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -42.88 |
Consensus MFE | -25.75 |
Energy contribution | -24.70 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.40 |
Mean z-score | -1.82 |
Structure conservation index | 0.60 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8397611 120 - 20766785 CAGUGAGAAUAUCGCGGAACAGGCGACAUACUCCGGCUUCCAGUCGGAAAAUGGCCUGAUUUGCCGGGGUCCUCAGGUCGAGCACUCGGUUGUCCAAGCGCGUGUCCUGGUUCACGCGAA ...........(((((((((.((.(((((..((((((.....))))))...((((((((...((....))..)))))))).((.((.((....)).)).))))))))).)))).))))). ( -46.80) >DroVir_CAF1 10586 120 - 1 CGGUCAAAAUAUCGCGGAACAAACGACAUACGCCAGCCUCCAGGCGAAAAAUGGCCUGAUUUGCUGGCGUUCUUAAGUCGAGUACGCGGUUAUCUAGUCUGGUGUCCUGGUUGACGCGUA (((.(.....((((((..((...((((..((((((((...(((((........)))))....))))))))......)))).)).))))))......).)))(((((......)))))... ( -42.60) >DroGri_CAF1 13793 120 - 1 CGGUCAAUAUAUCACGGAACAAACGGCAAACGCCGGCCUCCAGGCGAAAAAUGGCCUGAUUGGCUGGUGUCCUCAGAUCGAGCACUCGAUUAUCCAAUCUAGUGUCCUGAUUGACGCGUA ((((((((....((((((......((...(((((((((..(((((........)))))...)))))))))))...((((((....))))))......))).))).....)))))).)).. ( -43.50) >DroWil_CAF1 11092 120 - 1 CGGUCAAUAUAUCACGGAACAAACGACACACUCCGGCUUCCAGGCGGAAUAUAGCCUGAUUCGCUGGUGUUCUCAAAUCCAAAACACGAUUAUCCAGUCUAGUGUCCUGAUUGACGCGUA ((((((....((((.(((.((...(((..((.(((((...(((((........)))))....))))).)).....((((........)))).....)))...))))))))))))).)).. ( -32.60) >DroMoj_CAF1 14135 120 - 1 CGGUGAGAAUGUCGCGGAAGAGACGACAGACGCCAGCUUCCAGGCGAAAGAUGGCCUGGUUGGCUGGUGUGCGUAGAUCAAGCACACGAUUAUCCAGUCUCGUGUCCUGAUUAACGCGUA .........((((.(....).))))((..(((((((((.((((((........))))))..)))))))))((((.(((((.(.((((((..........))))))).))))).)))))). ( -51.90) >DroAna_CAF1 8976 120 - 1 CGGUGAGAAUGUCACGGAACAGACGGCACACGCCAGCCUCCAGCCUGAAAAUGGCCUGGUUGGCAGGAGUUCUCAGAUCUAGUACUCGGUUGUCCAAACGCGUGUCCUGGUUGACGCGGA (.((((.....)))).)....((((((....(((((((....(((.......)))..)))))))..((((.((.......)).)))).))))))......((((((......)))))).. ( -39.90) >consensus CGGUCAAAAUAUCACGGAACAAACGACACACGCCAGCCUCCAGGCGAAAAAUGGCCUGAUUGGCUGGUGUUCUCAGAUCGAGCACUCGAUUAUCCAAUCUCGUGUCCUGAUUGACGCGUA ..((((....((((.(((....((.....((((((((...(((((........)))))....)))))))).....((((........))))..........)).)))))))))))..... (-25.75 = -24.70 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:29 2006