| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,393,770 – 8,393,890 |
| Length | 120 |
| Max. P | 0.587272 |
| Location | 8,393,770 – 8,393,890 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.00 |
| Mean single sequence MFE | -34.56 |
| Consensus MFE | -20.84 |
| Energy contribution | -20.79 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8393770 120 - 20766785 UUUGCUUGGCCCUAACGAUCUUCGCCUUGCAGACAAAGUACGACUUUACUAUGAUGGGCGGUAUUUUGAUCGCCUGCAUGGUGGUGUUCCUGAUCUUCGGCAUCGUGGCCAUCUUUGUAA .((((..(((.............)))..))))((((((...(((.((((((((.((((((((......)))))))))))))))).)))(((((((....).)))).))....)))))).. ( -37.52) >DroVir_CAF1 5699 120 - 1 UUUGUCUGGCACUCACAAUAUUUGCCAUGCAAACCAAGGUGGACUUUACCAUGAUGGGCGGCGUAUUACUCGCUUGCUUGGUGGUCUUUAUGAUAUUUGGCAUUGUGGCCAUAUUUUUCA ......((((...(((((....(((((.....((((((((((......))))...((((((........)))))).)))))).(((.....)))...))))))))))))))......... ( -31.90) >DroGri_CAF1 9516 120 - 1 UUUGUCUCGCUUUGACAAUCUUUGCCACGCAAACCAAGGUGGACUUUACCAUGAUGGGCGGCAUCUUAGUCGCUUGCAUGGUCGUCUUUAUAAUCUUUGGCAUUGUGGCCAUAUUUGUAA .(((((.......))))).....((((((....((((((.((((...((((((.((((((((......)))))))))))))).)))).......))))))...))))))........... ( -39.20) >DroWil_CAF1 4384 120 - 1 UUUGCUUAGCCCUCACACUCUUUGCCCUGCAAACGAAAUACGAUUUUACGAUGAUGGGUGGCAUAUUAAUUGCUUGUAUGGUUGUAUUCUUGAUCUUUGGCAUUGUGGCCAUCUUUAUCA (((((...((.............))...)))))................(((((.(((((((.(((....((((.....(((((......)))))...))))..))))))))))))))). ( -24.12) >DroMoj_CAF1 9413 120 - 1 UUUGUCUGGCCCUCACGCUCUUUGCCAUGCAAACCAAGGUGGACUUCACCAUGAUGGGCGGCAUAUUGCUGGCCUGCAUGGUGGUCUUCAUGAUAUUUGGCAUCGUGGCCAUAUUCUUCA ......(((((...(((.....(((((((.....))..(((((..((((((((..((.((((.....)))).))..))))))))..)))))......))))).))))))))......... ( -40.60) >DroAna_CAF1 5487 120 - 1 UUUGCUUGGCCCUUACUCUUUUCGCCUGGCAGACGAAGUACGACUUCACCAUGAUGGGAGGAAUUCUAGUUGCCUGCAUGGUGGUGUUCCUCAUCUUUGGAAUCGUCGCUAUAUUCAUUA ((((((.(((.............))).)))))).((((((((((.((((((((.((((.((....)).....)))))))))))).(((((........))))).)))).))).))).... ( -34.02) >consensus UUUGCCUGGCCCUCACAAUCUUUGCCAUGCAAACCAAGGACGACUUUACCAUGAUGGGCGGCAUAUUAAUCGCCUGCAUGGUGGUCUUCAUGAUCUUUGGCAUCGUGGCCAUAUUUAUCA (((((..(((.............)))..)))))........((..((((((((.(((((((........)))))))))))))))...))........((((......))))......... (-20.84 = -20.79 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:25 2006