| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,388,977 – 8,389,089 |
| Length | 112 |
| Max. P | 0.697676 |
| Location | 8,388,977 – 8,389,089 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.43 |
| Mean single sequence MFE | -40.07 |
| Consensus MFE | -22.05 |
| Energy contribution | -22.83 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8388977 112 - 20766785 -AUUCACCCAUUUCUCGUUGCAGGGUCAGCAAAUGCUCGUACUUCCGCUAAUUGUAAUGGGAGCCCUGCUAAUCUUGGGAGGAUUUGCUAGUCUUUUGCUGCCAGAGACCCGU -.........(((((.((.((((((..(((((((.(((...((((((.((....)).)))))).((..........))))).)))))))..)))..))).)).)))))..... ( -30.30) >DroVir_CAF1 364 112 - 1 UAAUAAUCCAU-UCUGCGUGCAGGGCCAGCAGAUGCUGGUGCUGCCCCUGAUUGUGAUGGGCGCCCUGCUGAUUGUCGGUGGCUUUGCCAGUCUCUUCCUGCCCGAGACGCGU ...........-...((((...((((.((.(((.(((((((..(((.(((((...(((.(((.....))).)))))))).)))..))))))).)))..))))))...)))).. ( -43.00) >DroPse_CAF1 229 106 - 1 -AUU------UGUCUCGUUGCAGGGCCAGCAAAUGCUGGCUUUGCCGCUGAUUGUGAUGGGAGCGCUGCUAAUUGUUGGCGGAUUCGCCAGCCUACUGCUGCCAGAGACGCGG -...------.(((((((.(((((((((((....))))))))))).)).........(((.((((.........(((((((....)))))))....)))).)))))))).... ( -48.02) >DroMoj_CAF1 3248 105 - 1 ------UCCA--UCUGCUUGCAGGGCCAGCAGAUGUUGGUGCUGCCGCUGAUUGUGAUGGGCGCCUUGUUGAUUGUCGGCGGCUUUGCCAGUCUCUUCCUACCUGAGACGCGU ------..((--((((((.((...)).)))))))).(((((..(((((((((..(((..((...))..)))...)))))))))..)))))(((((.........))))).... ( -44.40) >DroAna_CAF1 49 112 - 1 -AUGAAGUCUGUUUUCCUUCCAGGGCCAACAAAUGCUUGUUCUGCCUUUAAUCGUUAUGGGUGCCCUACUCAUCCUGGGCGGAUUUGCCAGUCUCCUACUACCGGAAACGCGC -..(.((.(((...(((.((((((((.(((((....)))))..)))..........(((((((...))))))).))))).))).....))).)).)......((....))... ( -26.80) >DroPer_CAF1 229 106 - 1 -AUU------UGUUUCGUUGCAGGGCCAGCAAAUGCUGGCUCUGCCGCUGAUUGUGAUGGGAGCGCUGCUAAUUGUUGGCGGAUUCGCCAGCCUACUGCUGCCAGAGACGCGG -...------.(((((((.(((((((((((....))))))))))).)).........(((.((((.........(((((((....)))))))....)))).)))))))).... ( -47.92) >consensus _AUU___CCAU_UCUCCUUGCAGGGCCAGCAAAUGCUGGUUCUGCCGCUGAUUGUGAUGGGAGCCCUGCUAAUUGUCGGCGGAUUUGCCAGUCUCCUGCUGCCAGAGACGCGU ............((((...((((.((((((....))))))(((((((.((((((....((....))...)))))).)))))))...............))))..))))..... (-22.05 = -22.83 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:22 2006