Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,563,788 – 1,563,908 |
Length | 120 |
Max. P | 0.938826 |
Location | 1,563,788 – 1,563,908 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.23 |
Mean single sequence MFE | -30.34 |
Consensus MFE | -26.82 |
Energy contribution | -27.02 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.64 |
Structure conservation index | 0.88 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.938826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1563788 120 + 20766785 UCCUGGCCAAAUGGCUGGCGUGGACCACAUGAAAUCAAUUAAAAUAUUUAGCCAACUGCUUCCAGCACAUAAAAAUGCGUUGAGGGGGGAACGUGGACCUGAUAAUAAAAAGUAAUUGAA ..(..(((....)))..)((((.....))))...(((((((......(((((((.((.((..((((.(((....))).))))..)).))....)))..))))..........))))))). ( -29.49) >DroSec_CAF1 13559 119 + 1 UCCUGGCCAAAUGGCUGGCAUGGACCACAUGAAAUCAAUUAAAAUAUUUGGCCAACUGCUUCCAGCACAUACAAAUGCGUUGAGGG-GGAACGUGGACCUGAUAAUAAAAAGUAAUUGAA ..(..(((....)))..)((((.....))))...(((((((...((((.(((((..(.((((((((.(((....))).)))).)))-).)...))).)).))))........))))))). ( -31.70) >DroSim_CAF1 15082 118 + 1 UCCUGGCCAAAUGGCUGGCGUGGACCACAUGAAAUCAAUUAAAAUAUUUGGCCAACUGCUUCCAGCACAUA-AAAUGCGUUGAGGG-GGAGCGUGGACCUGAUAAUAAAAAGUAAUUGAA ..(..(((....)))..)((((.....))))...(((((((...((((.(((((.((.((((((((.(((.-..))).)))).)))-).))..))).)).))))........))))))). ( -32.50) >DroEre_CAF1 13682 119 + 1 UCCUGGCCAAAUGGCUGGCGUGGACCACAUGAAAUCAAUUAAAAUAUUCGGCCAACUGUUUCCAGCACAUAAAAAUGCGUUGAGUG-GGAACGUGGACCUGAUAAUAAAAAGUAAUUGAA ..(..(((....)))..)((((.....))))...(((((((...((((.(((((...(((((((((.(((....))).))....))-))))).))).)).))))........))))))). ( -31.00) >DroYak_CAF1 19578 119 + 1 UCCUGGCCAAAUGGCUGGCGUCGACCACAUGAAAUCAAUUAAAAUAUUUGGCCAACUGUUUCCAGCACAUAAAAAUGCGUUGAGGG-GGAACGUGGACCUUAUAAUAAAAAGUAAUUGAA ..(..(((....)))..)................(((((((...((((.(((((..(.(..(((((.(((....))).)))).)..-).)...))).))....)))).....))))))). ( -27.00) >consensus UCCUGGCCAAAUGGCUGGCGUGGACCACAUGAAAUCAAUUAAAAUAUUUGGCCAACUGCUUCCAGCACAUAAAAAUGCGUUGAGGG_GGAACGUGGACCUGAUAAUAAAAAGUAAUUGAA ..(..(((....)))..)((((.....))))...(((((((...((((.(((((.((.((..((((.(((....))).))))..)).))....))).))....)))).....))))))). (-26.82 = -27.02 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:00 2006