Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,361,954 – 8,362,062 |
Length | 108 |
Max. P | 0.609699 |
Location | 8,361,954 – 8,362,062 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.76 |
Mean single sequence MFE | -47.47 |
Consensus MFE | -26.80 |
Energy contribution | -27.17 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.15 |
Mean z-score | -1.84 |
Structure conservation index | 0.56 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8361954 108 - 20766785 CAGGUGGUGGCCGAGGGCGGUUGGCAGGGGGAUCCCUUG-CCGCCGAGCUCACCCAGCGACCCUCCCAAUCCGGAAGCUCCAAUU--CCGGUGGAGUACCACACGGAAGAU ...((((((.(((((((((((.((((((((...))))))-)))))).(((.....)))..))))).....((((((.......))--)))).))..)))))).(....).. ( -50.60) >DroSec_CAF1 445 108 - 1 CAGGUGGUGGCUGAGGGCGGUUGGCAGGGGGAUCCCUUG-CCGCCGAGCUCUUCCAGUGGCCCUCCCAAUCCGGAAGCUCCAAUC--CCGGUGGAGUACCACACUGAAGAU (((((((((.(((((((((((.((((((((...))))))-)))))..(((.....))).))))))(((..((((...........--))))))))))))))).)))..... ( -49.60) >DroSim_CAF1 445 108 - 1 CAGGUGGUGGCCGAGGGCGGUUGGCAGGGGGAUCCCUUG-CCGCCGAGCUCUCCCAGCGGCCCUCCCAAUCCGGAAGCUCCAAUU--CCGGUGGAAUACCACACGGAAGAU ...((((((...(((((((((.((((((((...))))))-)))))..(((.....))).))))))(((..((((((.......))--)))))))..)))))).(....).. ( -53.10) >DroEre_CAF1 446 108 - 1 CAGGUGGUGGCCGAGGGCGGCUGGCAGGGAGAUCCCUUG-CCGCCAGGCCCACCCAACGGCAGUUCCAAUCCGGACGCACCAAUC--CCGGUGGAAUACCACACGGAAGAU ..((((((((((...((((((....((((....)))).)-))))).)).))))).....((.((((......)))))))))....--(((((((....)))).)))..... ( -49.00) >DroYak_CAF1 445 108 - 1 CAGGUGGUGGCCGAGGGCGGUUGGCAGGGAAAUCCCUUG-CCGCCGAGCUCUCCCGAUGGCAACCCCAAUCCGGAGGCACCAAUC--ACGGUGGAGUACCACACGGAAGAU ....(((((.(((((..((((.(((((((.....)))))-))))))..)))(((.(((((.....)).))).)))))))))).((--.((((((....)))).)))).... ( -46.50) >DroPer_CAF1 459 93 - 1 CAGGUGGUGGCCGAGGGCGGCUGGCAGGG--AUCCCCCGAACGACCAGAUCCUGCUU----------------CAGCCACCGAUCGUACGGUCGAAUACCACACCGAGGAC ..(((((((((.((((.((((((((.(((--....)))....).))))...))))))----------------).)))))(((((....))))).......))))...... ( -36.00) >consensus CAGGUGGUGGCCGAGGGCGGUUGGCAGGGGGAUCCCUUG_CCGCCGAGCUCUCCCAGCGGCCCUCCCAAUCCGGAAGCACCAAUC__CCGGUGGAAUACCACACGGAAGAU ...((((((((((.(((((((.(((((((.....))))).)))))..)))).....................((.....)).......))))....)))))).(....).. (-26.80 = -27.17 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:13 2006