| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,359,564 – 8,359,676 |
| Length | 112 |
| Max. P | 0.761858 |
| Location | 8,359,564 – 8,359,676 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 75.22 |
| Mean single sequence MFE | -32.94 |
| Consensus MFE | -14.65 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8359564 112 + 20766785 -CCCACUUUCCUUUUGCAGUCCUGCCAUUUGGCAGCAAAAUUCCUGGUCUAAAUGAGUACGAGAGUCCGUACUAUGAGAUGUGGUACAUCUUUCAGAUGCUCAUCACCCCGAU -..........((((((.....((((....)))))))))).((..(((....(((((((((((((...(((((((.....)))))))..))))).).))))))).)))..)). ( -29.20) >DroGri_CAF1 77464 111 + 1 -CUUU-GGGGCUCCCGCAGUGUUGCCAUUUGGCAGCAAACUCCCGGGAAUAAAUGAGUAUGCGACGCCCUACUAUCAAGUGUGGUUCUGCUUUCACAUGCUCAUCACUCCGAU -..((-((((.(((((...(((((((....)))))))......)))))....(((((((((.((.((...(((((.....)))))...))..)).)))))))))..)))))). ( -41.30) >DroEre_CAF1 75854 111 + 1 -CCC-CUUUAUUCUGUCAGUGCUGCCAUUUGGCAGUAGGAUACCUGGUCUGAAUGAGUACGAGAGUCCGUACUACGAGAUGUGGUACGUCUUUCAGAUGCUCAUCACCCCGAU -...-........((((..(((((((....))))))).))))..(((..(((.((((((((((((..((((((((.....)))))))).))))).).)))))))))..))).. ( -40.90) >DroWil_CAF1 151022 112 + 1 -CCGUUCAUGGGUUUUCAGUUCUGCCCUUUGGCAGCAAAAUCCCCGGAGUCAAUGAAUACGCCACACCAUACUAUCAAUUGUGGUACGUCUUUCACAUGCUCAUCACUCCGAU -........(((((((.....(((((....))))).))))))).((((((..((((....((((((.............))))))..((.....))....)))).)))))).. ( -27.42) >DroYak_CAF1 69366 112 + 1 GAGU-CUUUCUUCUUCCAGUGUUGCCAUUUGGCAGUAGGAUUCCUGGUCUGAAUGAGUACGAGAGUCCGUACUACGAGUUGUGGUACGUGUUUCAGAUGCUCAUCACCCCGAU ((((-(((....((.((((((....)).)))).)).))))))).(((..(((.(((((((..(((..((((((((.....))))))))..)))..).)))))))))..))).. ( -35.30) >DroMoj_CAF1 82890 111 + 1 -CCUU-UGAGCACUUGCAGUUCUGCCCUUUGGCAGCAAGAUACCGGGCGUCAAUGAAUAUGCCACACCCUACUAUCAAAUUUGGUUCGUCUUUCACCUGCUCAUCACACCGAU -....-(((((((((((.....((((....)))))))))....(((((((........))))).......((((.......)))).)).........)))))).......... ( -23.50) >consensus _CCUUCUUUGCUCUUGCAGUGCUGCCAUUUGGCAGCAAAAUACCUGGUCUAAAUGAGUACGAGACUCCGUACUAUCAAAUGUGGUACGUCUUUCACAUGCUCAUCACCCCGAU .....................(((((....)))))..........((.....(((((((..........((((((.....))))))...........)))))))....))... (-14.65 = -15.10 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:11 2006