| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 8,357,013 – 8,357,133 |
| Length | 120 |
| Max. P | 0.607649 |
| Location | 8,357,013 – 8,357,133 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.67 |
| Mean single sequence MFE | -39.52 |
| Consensus MFE | -23.17 |
| Energy contribution | -22.35 |
| Covariance contribution | -0.82 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8357013 120 - 20766785 CGAUCGUGAGUGCCGUCAGGAUAUUGAUUUGUUCGAUGAAAAUGGUCAGAAGUUGUUCUCCGCCCGAAAGGGUGAUGUCUUGCAAAUACCUAUCUUCUCGCUCCAUCACGAUCCCGAGAA .((((((((..((.(..((((((...((((((..(((..........((((....)))).(((((....)))))..)))..))))))...))))))..)))....))))))))....... ( -37.60) >DroPse_CAF1 71199 120 - 1 AGAUCGCGAGUGCAACAACGACAUCGACUUGUGUGACGAGAGCGGGGAGAAGUUGUUCUCCGCCAAGAAGGGCGAUGUUCUGCAGAUACCCAUCUUUCCUCUGCACCACGAUCCCGAGAA .(((((.(.(((((((((((....))..)))).....(((.((((((((......)))))))).((((.(((...((.....))....))).))))..))))))))).)))))....... ( -37.70) >DroEre_CAF1 73144 120 - 1 CGAUCGUGAGUGCAGUCAGGAUAUAGAUUUGUUCAGUGAAAGCGGCCAGAAGUUGUUCUCCGCCCGAAAGGGCGAUGUCCUGCAAAUACCCAUAUUUUCGCUCCAUCACGAUCCCGAGAA .((((((((..((.(.((((((((...((((..(.((....)))..))))..........(((((....))))))))))))))(((((....)))))..))....))))))))....... ( -42.30) >DroYak_CAF1 66609 120 - 1 CGAUCGUGAGUGCCGUGAGGACAUUGAUUUGUGCGAUGAAAACGGUAAGAAGUUGUUCUCCGCACGAAAGGGCGAUGUCGUGCAAAUACCCAUCUUUUCGCUCCAUCACGAUCCCGAGAA .(((((((((((((....)).)))...((((((((..((((((........))).)))..)))))))).((((((....(((........)))....)))).)).))))))))....... ( -40.20) >DroAna_CAF1 65930 120 - 1 CGAUCGUGAAUGCAGCGAGGACAUUGACUUGUUCAGUGAAAGAAGUGAAAAAUUGUUCUCCGCCCGGAAGGGUGACAAGCUGCAAAUACCCAUUUUUUCAAUCCAUCACGAUCCGGAAAA .((((((((.(((((((((((((((.((((.((......)).)))).))....)))))))(((((....)))))....))))))(((....)))...........))))))))....... ( -41.90) >DroPer_CAF1 70949 120 - 1 AGAUCGCGAGUGCAACAAAGACAUCGACUUGUGUGACGAGAGCGGGGAGAAGUUGUUCUCCGCCAAGAAGGGCGAUGUUCUGCAGAUACCCAUCUUUCCUCUGCACCACGAUCCCGAGAA .(((((.(.(((((.....(((((((.((((.....)))).((((((((......)))))))).........)))))))....((((....))))......)))))).)))))....... ( -37.40) >consensus CGAUCGUGAGUGCAGCAAGGACAUUGACUUGUGCGAUGAAAGCGGUGAGAAGUUGUUCUCCGCCCGAAAGGGCGAUGUCCUGCAAAUACCCAUCUUUUCGCUCCAUCACGAUCCCGAGAA .(((((((.(((.........(((((.......))))).....(((.(((((((((.(..(((((....)))))..)....))))........))))).))).))))))))))....... (-23.17 = -22.35 + -0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:10 2006