Locus 2264

Sequence ID	2R_DroMel_CAF1
Location	8,350,223 – 8,350,316
Length	93
Max. P	0.776234

overview

Window 8

Location	8,350,223 – 8,350,316
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	73.66
Mean single sequence MFE	-16.35
Consensus MFE	-5.88
Energy contribution	-6.12
Covariance contribution	0.24
Combinations/Pair	1.33
Mean z-score	-1.87
Structure conservation index	0.36
SVM decision value	0.54
SVM RNA-class probability	0.776234
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8350223 93 + 20766785
UCACUCAUACGCACUGUUAUCCAGUAUCUAAAGUUACCAGUAUGUUCAUUUAGAACUUCUCCUCCUUUUGAGUGCCUUAUCUAUCAGAUAAAC
.((((((.....((((.....)))).((((((...((......))...))))))..............))))))..(((((.....))))).. ( -15.80)
>DroSec_CAF1 61873 88 + 1
UUACUCAUACGCACUGUUGUGCAGUAUCUAAAGCUUGCAGCAUGUUCAUUUAGAACCACCCCUCCUUUUCAGUGCCUUAUCCA-----UAAAC
..........((((((..((((.(((.........))).))))((((.....)))).............))))))........-----..... ( -15.70)
>DroSim_CAF1 61030 75 + 1
U----CAUACGCACUGUUAUCCAGUAUCUAAAGUUGGCAGCAUGUUC--------------CUCCUUUUCAGUGCCUUAUCCAUCAGAUAAAC
.----.....((((((.............((((..((.((....)))--------------)..)))).)))))).(((((.....))))).. ( -11.54)
>DroEre_CAF1 60084 92 + 1
UCACUCAUACGCACUGUUAG-CAGUAGCCAUAUUUAACUAGACGUUCAUCUGGAAGUUCAGCUCCUUUUCAGUGCGCUAUCCAUCAGAUAAAA
.........(((((((....-.((.(((...((((..(((((......)))))))))...))).))...))))))).((((.....))))... ( -18.90)
>DroYak_CAF1 59737 93 + 1
UCACUUAUACGCACUGUUACCCAGUAUCUAUAUUUCGCAAGACGUUCAUCCAGAACUAUAGCUCCUUUUCAGUGCCCUAUCCAUCGGAUAAGU
..((((((..((((((......(((.........((....)).((((.....))))....)))......))))))((........)))))))) ( -19.80)
>consensus
UCACUCAUACGCACUGUUAUCCAGUAUCUAAAGUUAGCAGCAUGUUCAUCUAGAACUACACCUCCUUUUCAGUGCCUUAUCCAUCAGAUAAAC
..........((((((................((.....))..((((.....)))).............)))))).................. ( -5.88 =  -6.12 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:07 2006