Locus 2263

Sequence ID 2R_DroMel_CAF1
Location 8,344,793 – 8,344,884
Length 91
Max. P 0.841015
window3717

overview

Window 7

Location 8,344,793 – 8,344,884
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 80.04
Mean single sequence MFE -25.05
Consensus MFE -15.57
Energy contribution -15.65
Covariance contribution 0.08
Combinations/Pair 1.40
Mean z-score -2.07
Structure conservation index 0.62
SVM decision value 0.75
SVM RNA-class probability 0.841015
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8344793 91 + 20766785
AAACGGCUGGCAAACAGGUAAAUGGAAAGCGCCGCCAGCCAACCAGAUUGCCUCUCCAUAAUUGGCCAUAAUGCUUCAUUAUCGCCGGCCA
....(((((((....((((((.(((...((.......))...)))..))))))....(((((.(((......)))..))))).))))))). ( -28.60)
>DroSim_CAF1 55587 91 + 1
AAAUGGCUGGCAAACAGGUAAAUGGAAAGCGCCGGCAGCCAACCAGAUUGCCUCUCCAUAAUUGGCCAUAAUGCUUCAUUAUCGCCGGCCA
...((((((((....((((((.(((...((.......))...)))..))))))....(((((.(((......)))..))))).)))))))) ( -28.50)
>DroEre_CAF1 54700 90 + 1
AAACGGCUGGCAAACAGGUAAAUGGAAAACGCCAGGAG-CCACCAGAUUGGCUCUCCAUAAUUGGCCAUAAUGCUUCAUUAUCGCCGACCA
....(((((((...((......))......)))))(((-(((......)))))).))....(((((.((((((...)))))).)))))... ( -27.30)
>DroWil_CAF1 122273 82 + 1
AAAUGGU--GC-----AGCAAAUGGAAAACGCUAAAAGCUAACCAGAUUGCC--UACGUAAUUGCUUAUAAUGGUUCAUUAUUGUCUACUC
...((((--..-----(((...(((......)))...))).))))((((((.--...))))))((..((((((...)))))).))...... ( -11.60)
>DroYak_CAF1 53786 91 + 1
AAGCGGCUGGCAAACAGGUAAAUGGAAAACGCCGAGAGGCAACCAGAUUGCCUCUCCAUAAUUGGCCAUAAUGCUUCAUUAUCGCCGACUA
.((((((.(((.....(((...........)))(((((((((.....)))))))))........)))((((((...)))))).)))).)). ( -30.10)
>DroAna_CAF1 53479 86 + 1
---CGGCAGGCAAACAGGUAAAUGGAAAACGCUAAAAGCUAAUGAGAUUGCC--UUCGUAAUUGGCCAUAAUGGCUCAUUAUUGCUGGCCA
---.(((.(((((..((((((..(.....)((.....))........)))))--)...((((.((((.....)))).))))))))).))). ( -24.20)
>consensus
AAACGGCUGGCAAACAGGUAAAUGGAAAACGCCAAAAGCCAACCAGAUUGCCUCUCCAUAAUUGGCCAUAAUGCUUCAUUAUCGCCGACCA
....(((((((....((((((.(((....(.......)....)))..))))))....(((((.(((......)))..))))).))))))). (-15.57 = -15.65 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:06 2006