Locus 2262

Sequence ID 2R_DroMel_CAF1
Location 8,342,805 – 8,342,898
Length 93
Max. P 0.655151
window3716

overview

Window 6

Location 8,342,805 – 8,342,898
Length 93
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 88.79
Mean single sequence MFE -32.76
Consensus MFE -24.16
Energy contribution -24.00
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -1.77
Structure conservation index 0.74
SVM decision value 0.25
SVM RNA-class probability 0.655151
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8342805 93 + 20766785
GCCACAGAGUUAUUUGUUUGCACAUAAAAAUAAGCCAGGACGCAGAGUCCUGGCAGUCCUGUGAGUCCUCGGAG-------AC--CUGCGAGAGUCGAGCCG
(((((((..((..((((((........))))))((((((((.....))))))))))..))))).(.(((((.(.-------..--.).)))).).)..)).. ( -31.90)
>DroSec_CAF1 54654 93 + 1
GCCGCAGAGUUAUUUGUUUGCACAUAAAAAUAAGCCAGGGCGUAGAGUCCUGGCAGUCCUGUAAGUCCUGGGAG-------AC--CCGGGAGAGUCGAGCCG
(((((((..((..((((((........))))))((((((((.....))))))))))..))))...(((((((..-------.)--)))))).....).)).. ( -34.10)
>DroSim_CAF1 53866 93 + 1
GCCGCAGAGUUAUUUGUUUGCACAUAAAAAUAAGCCAGGACGUAGAGUCCUGGCAGUCCUGUGAGUCCUGGGAG-------AC--CCGGGAGAGUCGAGCCG
(((((((..((..((((((........))))))((((((((.....))))))))))..)))))..(((((((..-------.)--)))))).......)).. ( -36.50)
>DroEre_CAF1 53026 95 + 1
GCCACAGAGUUAUUUGUUUGCACAUAAAAAUAAGCCAGGACGGAGAGUCCUGGCAGUCCUGUGAGUCCUGGGAG-------AAUCGAGGAAGAAUCGAGUCG
(((((((..((..((((((........))))))((((((((.....))))))))))..))))).)).......(-------(.((((.......)))).)). ( -30.90)
>DroYak_CAF1 51981 102 + 1
GCCACAGAGUUAUUUGUUUGCACAUAAAAAUAAGCCAGAACGGAGAGUCCUGGCAGUCCUGUGAGUCCUCGGAGUCCUGUGAGUCCUGGGAGAAUCGAGCCG
(((((((..((..((((((........))))))(((((.((.....)).)))))))..)))))..((((.(((.((....)).))).)))).......)).. ( -30.40)
>consensus
GCCACAGAGUUAUUUGUUUGCACAUAAAAAUAAGCCAGGACGGAGAGUCCUGGCAGUCCUGUGAGUCCUGGGAG_______AC__CCGGGAGAGUCGAGCCG
(((((((..((..((((((........))))))((((((((.....))))))))))..)))))..((....)).........................)).. (-24.16 = -24.00 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:05 2006