Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,329,221 – 8,329,324 |
Length | 103 |
Max. P | 0.909154 |
Location | 8,329,221 – 8,329,324 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 74.56 |
Mean single sequence MFE | -20.53 |
Consensus MFE | -7.92 |
Energy contribution | -8.75 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 0.39 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8329221 103 + 20766785 AAUAACAACAACACGCCGCCUCGGC--UG-C---------CAUAAUAAUAAACAAAUUGUGCAUGAGC-CAAAAAUAUUCAUGCAAUUAGGCAUUGAGUAAACAAAGAGCGAAUGC ................(((.(((((--(.-.---------(((.(((((......)))))..))))))-).....(((((((((......))).))))))......)))))..... ( -20.50) >DroPse_CAF1 47459 115 + 1 AACGGCAAUGGCAA-CGGCAAUGGCAAUGGCAAUAAUAAGAAUAAUAAUAAACGAAUGCCGCUCAUGCACAAAAAUAUUCAUGCAAUUAGGCAAUGAGUAAACACAGAGCAAAACC ...((((.((....-))((....))...............................))))((((.((........(((((((((......)).)))))))....))))))...... ( -20.50) >DroSim_CAF1 45299 103 + 1 AAUAACAACAACACGCCGCCUCGGC--UG-C---------CAUAAUAAUAAACAAAUUGUGCAUGAGC-CAAAAAUAUUCAUGCAAUUAGGCAUUGAGUAAACAAAGAGCGAAUGC ................(((.(((((--(.-.---------(((.(((((......)))))..))))))-).....(((((((((......))).))))))......)))))..... ( -20.50) >DroEre_CAF1 44585 103 + 1 AAUAACAAUAACACGCCGACUCGGC--GG-C---------CAUAAUAAUAAACAAAUUGUGCAUGAGC-CAAAAAUAUUCAUGCAAUUAGGCAUUGAGUAAACAAAGAGCGGAUGC ...............(((.(((...--((-(---------(((.(((((......)))))..))).))-).....(((((((((......))).))))))......)))))).... ( -24.40) >DroAna_CAF1 44081 88 + 1 AACA---------G------ACGGC--CA-U---------AACAAUAAUAAACAAAUUGUGCAUGAGC-CAAAAAUAUUCAUGCAAUUAGGCAAUGAGUAAACAAAGACCAAAUAC ....---------.------..(((--((-(---------.(((((.........)))))..))).))-).....(((((((((......)).)))))))................ ( -16.90) >DroPer_CAF1 46005 115 + 1 AACGGCAACAGCAA-UGGCAAUGGCAAUGGCAAUAAUAAGAAUAAUAAUAAACGAAUGCCGCUCAUGCACAAAAAUAUUCAUGCAAUUAGGCAAUGAGUAAACACAGAGCAAAACC ...(....).((..-(((((..(((...((((........................)))))))..))).......(((((((((......)).)))))))....))..))...... ( -20.36) >consensus AACAACAACAACAC_CCGCCACGGC__UG_C_________AAUAAUAAUAAACAAAUUGUGCAUGAGC_CAAAAAUAUUCAUGCAAUUAGGCAAUGAGUAAACAAAGAGCAAAUGC .......................((...............................(((.((....)).)))...(((((((((......))).))))))........))...... ( -7.92 = -8.75 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:04 2006