Locus 2260

Sequence ID 2R_DroMel_CAF1
Location 8,318,505 – 8,318,606
Length 101
Max. P 0.928125
window3714

overview

Window 4

Location 8,318,505 – 8,318,606
Length 101
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 79.70
Mean single sequence MFE -16.67
Consensus MFE -10.10
Energy contribution -10.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 0.61
SVM decision value 1.19
SVM RNA-class probability 0.928125
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8318505 101 + 20766785
UCAAAGUGCGGGUUCUCACAAAAAAAAAAAAAAAAACGAAGGAAAUAAUGCAAAAAAUCGG--AAAGGAAUGAGAAAUGCAUGGCAAUUUUGUUAUGCAAAUG
............((((((..................(....)...............((..--....)).)))))).(((((((((....))))))))).... ( -15.50)
>DroSec_CAF1 35581 99 + 1
UCAAAGUGCCCGCUCA-AAAAAAAAAGAAAAAAAAACGAGUUAAAAAAUGCACAAAAUCGG--A-AGGAAUGAGAAAUGCAUGGCAAUUUUGUUAUGCAAAUG
(((..((((..((((.-....................))))........))))....((..--.-.))..)))....(((((((((....))))))))).... ( -17.20)
>DroSim_CAF1 31247 98 + 1
UCAAAGUGCCGACUCA-ACAAAAAA--AAAAAAAAACGAGUUAAAAAAUGCACAAAAUCGG--AAAGGAAUGAGAAAUGCAUGGCAAUUUUGUUAUGCAAAUG
.((((((((((((((.-........--..........))))).....(((((.....(((.--.......)))....)))))))).))))))........... ( -16.61)
>DroYak_CAF1 32340 98 + 1
UCAAAGUGCCGGC--G-ACGGAAAAAAAAUAUAUAUUCGGGUAAAAAAUGCACAAAAUCGG--AAAGGAAUGAGAAAUGCAUGGCAAUUUUGUUAUGCAAAUG
(((.....(((..--.-.)))..............(((.(((..............))).)--)).....)))....(((((((((....))))))))).... ( -18.04)
>DroAna_CAF1 31935 94 + 1
UCAAAGAGCAUGU--G-GCAGACUAAAAAUAAAA----UGGCGAACAAC--AAAAAAAUGGCCAACGGAAUGAGAAAUGCAUGGCAAUUUUGUUAUGCAAAUG
(((....((....--.-))...............----((((.(.....--.......).))))......)))....(((((((((....))))))))).... ( -16.00)
>consensus
UCAAAGUGCCGGCUCA_ACAAAAAAAAAAAAAAAAACGAGGUAAAAAAUGCACAAAAUCGG__AAAGGAAUGAGAAAUGCAUGGCAAUUUUGUUAUGCAAAUG
.............................................................................(((((((((....))))))))).... (-10.10 = -10.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:03 2006