Locus 226

Sequence ID 2R_DroMel_CAF1
Location 1,562,506 – 1,562,619
Length 113
Max. P 0.744525
window503

overview

Window 3

Location 1,562,506 – 1,562,619
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.32
Mean single sequence MFE -30.35
Consensus MFE -19.80
Energy contribution -20.68
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -1.91
Structure conservation index 0.65
SVM decision value 0.46
SVM RNA-class probability 0.744525
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1562506 113 + 20766785
AAUAAAUUUUUGAUUGACGACACGGUGAAGGUUAGUCAAACAAGAAAAGUUGCUCCUC---AGAAUACA----GAUGGGCCAUGGUCCCAUCUUGUAUUUGCCCAGGGCAGGUGAACCUG
......((((((.((((((((.(......)))).))))).)))))).....((.(((.---.(((((((----(((((((....).)))))).)))))))....)))))(((....))). ( -37.00)
>DroSec_CAF1 12245 104 + 1
AAUAAAUUUUUGAUUGAC---------AAGGUUAGUCAAACAAGAAAAGUUGCUCCUC---AGAAUAUA----GAUGGGCCAUCGUCCCAUCUUGUAUUUGCCCAGGGCAGGUGAACCCG
......((((((.(((((---------.......))))).))))))....(((.(((.---.(((((((----(((((((....).)))))).)))))))....))))))((....)).. ( -30.60)
>DroSim_CAF1 13777 104 + 1
AAUAAAUUUUUGAUUGAC---------AAGGUUAGUCAAACAAGAAAAGUUGCUCCUC---AGAAUAUA----GAUGGGCCAUCGUCCCAUCUUGUAUUUGCCCAGGGCAGGUGAACCCG
......((((((.(((((---------.......))))).))))))....(((.(((.---.(((((((----(((((((....).)))))).)))))))....))))))((....)).. ( -30.60)
>DroYak_CAF1 18628 115 + 1
GAUAAAUUUUCGAUUGACGGCAAGGUAAAGGUUAGUCAAACUAGAAAAGUUACUCCUUACAAGAACAUACGUAGAUGCG----GGUCUUA-CUUGUAUUUACUCAGGGCAGGUGAACUUG
...........(((((((............))))))).........(((((.((((((....(......)(((((((((----((.....-)))))))))))..)))).))...))))). ( -23.20)
>consensus
AAUAAAUUUUUGAUUGAC_________AAGGUUAGUCAAACAAGAAAAGUUGCUCCUC___AGAAUAUA____GAUGGGCCAUCGUCCCAUCUUGUAUUUGCCCAGGGCAGGUGAACCCG
........((((((((((............)))))))))).......(.((((.(((.....(((((((....((((((.......)))))).)))))))....))))))).)....... (-19.80 = -20.68 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:59 2006