Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,301,886 – 8,301,991 |
Length | 105 |
Max. P | 0.668879 |
Location | 8,301,886 – 8,301,991 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 80.56 |
Mean single sequence MFE | -24.92 |
Consensus MFE | -16.55 |
Energy contribution | -17.80 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.30 |
Mean z-score | -1.57 |
Structure conservation index | 0.66 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8301886 105 - 20766785 AAUUCCCACAUAUACUUCUUAAAUUUCUAUUUCGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGUCGAAAUUUUCUCGGCUUU-G--UGGGCGAACGUAGCACA ..........................(((((((((((...(((...(((((....)))))....)))(((((.......)))))...-.--.))))))).)))).... ( -30.40) >DroSec_CAF1 27419 105 - 1 AAUUCCACCAUAUACUUCUUAAAUUUCUAUUUGGCCCUUUGAGACUCGCAAGUAAUUGCGUCAACUCGUCGAAAUUUUGUCGGCUUU-G--UGGGCGAACGGAGCACA ..((((.............(((((....)))))((((...(((...(((((....)))))....)))(((((.......)))))...-.--.))))....)))).... ( -26.60) >DroSim_CAF1 22953 105 - 1 AAUUCCCACAUAUACUUCUUAAAUUUCUAUUUUGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGUCGAAAUUUUCUCGGCUUU-G--UGGGAGAAUGGAGCACA ..((((((((..............................(((...(((((....)))))....)))(((((.......)))))..)-)--))))))........... ( -28.30) >DroEre_CAF1 23761 103 - 1 AAUUCCCCCAAAUA-UUCUUAAAUUUCUAUUUCGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGUCGAAAUU-UCUCAGCUUU-G--UGGUCGGGCGCAGCACA ..............-.................(((((...(((...(((((....)))))....)))((.((....-..)).))...-.--.....)))))....... ( -21.30) >DroYak_CAF1 24153 103 - 1 AAUUCCCCUAUAUA-UUCUUAAAUUUCUAUUUCGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGAGGAAAUU-CCCCAGCUUU-G--UGGUCGAGCGAAGCACA ..............-.....................(((((((...(((((....)))))....))))))).....-.....(((((-(--(......)))))))... ( -25.10) >DroPer_CAF1 26306 87 - 1 --------UAUUUG-GCUUUAAAAUUCUAUUUCGCC-UUUGAG--UCACGGGUAAUUGCUUCAGCUCAAUGAAAUU-UCUCGGCUUUUGUGCGGGCGGAC-------- --------......-...............((((((-((((((--(...((((....))))..)))))).......-.....((......))))))))).-------- ( -17.80) >consensus AAUUCCCCCAUAUA_UUCUUAAAUUUCUAUUUCGCCCUUUGAGACUCGCAAGUAAUUGCGUCAGCUCGUCGAAAUU_UCUCGGCUUU_G__UGGGCGAACGGAGCACA ..............................(((((((...(((...(((((....)))))....)))(((((.......)))))........)))))))......... (-16.55 = -17.80 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:00 2006