Locus 2256

Sequence ID 2R_DroMel_CAF1
Location 8,298,581 – 8,298,677
Length 96
Max. P 0.835571
window3709

overview

Window 9

Location 8,298,581 – 8,298,677
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 85.57
Mean single sequence MFE -20.26
Consensus MFE -19.24
Energy contribution -19.48
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.58
Structure conservation index 0.95
SVM decision value 0.73
SVM RNA-class probability 0.835571
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8298581 96 + 20766785
CCACUUACCGCCCAAUUUCCACCCA----CCGCCCAUCUGGAUCAGCUUUAGCCGCAGUCCGCUCAGUCGGGCAACAUCAUUAUCUGAUUGAGCUGAAUA
.........((......((((....----.........))))...((....)).))..((.((((((((((..((.....))..)))))))))).))... ( -20.32)
>DroSec_CAF1 24147 96 + 1
CCACUUACCGCCCACAUUCCACCCA----CCGCCCACCUGGAUCAGCUUUAGCCGCAGUCCGCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCUGAAUA
...............((((......----..........((((..((.......)).))))(((((((((((.((.....)).))))))))))).)))). ( -21.40)
>DroSim_CAF1 19570 96 + 1
ACACUUACCGCCCACUUUCCGCCCA----CCGCCCACCUGGAUCAGCUUUAGCCGCAGUCCGCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCUGAAUA
.........(((((......((...----..)).....)))....((....)).))..((.(((((((((((.((.....)).))))))))))).))... ( -20.60)
>DroEre_CAF1 20446 85 + 1
CCACUGCCC-----------GCCCACUUUCCGCCCACCUGGAUCAGCUUUAGCC----UCCGCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCAGAAUG
.........-----------...................(((...((....)).----)))(((((((((((.((.....)).)))))))))))...... ( -19.50)
>DroYak_CAF1 20685 96 + 1
CCACUUACCGCCCACAUAACGCCCACUUACCGCCCACCUGGAUCAGCUUUAGCC----UCCGCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCAGAAUA
.......................................(((...((....)).----)))(((((((((((.((.....)).)))))))))))...... ( -19.50)
>consensus
CCACUUACCGCCCACAUUCCGCCCA____CCGCCCACCUGGAUCAGCUUUAGCCGCAGUCCGCUCAGUCGGACAACAUCAUUAUCUGAUUGAGCUGAAUA
.......................................((((..((....))....))))(((((((((((.((.....)).)))))))))))...... (-19.24 = -19.48 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:59 2006