Locus 2255

Sequence ID 2R_DroMel_CAF1
Location 8,298,364 – 8,298,454
Length 90
Max. P 0.729465
window3708

overview

Window 8

Location 8,298,364 – 8,298,454
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 86.78
Mean single sequence MFE -27.80
Consensus MFE -21.22
Energy contribution -22.22
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.76
SVM decision value 0.42
SVM RNA-class probability 0.729465
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8298364 90 + 20766785
CACACGCUCGUGUUUAUACACUCCAUAUACAUAUGAGGAGUGUGUUUUGCAAAAGGGACUUGUCCGUGGAGAUGGUGUGCUGGAGCUGGG
(((((.(((.(((..(((((((((.(((....))).)))))))))...)))....(((....)))...)))...)))))........... ( -27.70)
>DroSec_CAF1 23927 82 + 1
CACACGCUCGUGUUUAUACACUCCAUAUACAUAUGAGGAGUGUGCUUUGCAGAAGGGACUUGUCCAUGGAGAUGGA--G------CUGGG
..((.((((.......((((((((.(((....))).)))))))).(((.((....(((....))).)).)))..))--)------))).. ( -23.70)
>DroSim_CAF1 19350 88 + 1
CACACGCUCGUGUUUAUACACUCCAUAUACAUAUGAGGAGUGUGCCUUGCAGAAGGGACUUGUCCAUGGAGAUGGA--GCUGGAGCUGGG
..((.((((((((....))))(((((...(((....(((..((.((((....)))).))...))))))...)))))--....)))))).. ( -26.30)
>DroEre_CAF1 20225 85 + 1
CACACGCUCGUGUUUAUACACUCCAUAUACAUAUGAGGAGUGUGUUUAGCAGUAGGGACUUGUCCGUGGAGGACGA--GAUGGAGCU---
.....((((.((((.(((((((((.(((....))).)))))))))..)))).......(((((((.....))))))--)...)))).--- ( -33.00)
>DroYak_CAF1 20465 85 + 1
CACACGCUCGUGUUUAUACACUCCAUAUACAUAUGAGGAGUGUGUUUAGCAGUAGGGACUUGUCCGUGGCGGAAGA--GAUGGAGCA---
.....((((.((((.(((((((((.(((....))).)))))))))..)))).......(((.((((...)))).))--)...)))).--- ( -28.30)
>consensus
CACACGCUCGUGUUUAUACACUCCAUAUACAUAUGAGGAGUGUGUUUUGCAGAAGGGACUUGUCCGUGGAGAUGGA__GAUGGAGCUGGG
.....((((.(((..(((((((((.(((....))).)))))))))...)))....(((....))).................)))).... (-21.22 = -22.22 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:58 2006