Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,292,997 – 8,293,088 |
Length | 91 |
Max. P | 0.843071 |
Location | 8,292,997 – 8,293,088 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -33.36 |
Consensus MFE | -22.86 |
Energy contribution | -23.78 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.09 |
Mean z-score | -2.00 |
Structure conservation index | 0.69 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8292997 91 - 20766785 UGCAGCGGCUGGUG---------UUGCUGCUGUGCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCAUUGGCGUGGUGUGGCAUG .((((((((....)---------))))))).((((((..(((.(((((.((...((..((.......))..)).....))...))))).))).)))))). ( -35.70) >DroSim_CAF1 14069 100 - 1 UGCAGCGGCUGGUGUUGCUGGUGUUGCUGCUGUGCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCACUGGCGUGGUGUGGCAUG ..(((((((....)))))))((((..(.((..(((((.(.....((((((....((..((.......))..)).))))))..))))))..)))..)))). ( -40.30) >DroEre_CAF1 14835 83 - 1 UGCAGCGGCUGGUG---------CU--------GCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCAUUGGCAUGGUGUGGCAUG ....((.(((.(((---------((--------((....))...((((((....((..((.......))..)).))))))....))))).).)).))... ( -26.10) >DroYak_CAF1 15021 91 - 1 UGCAGCGGCUGGUG---------UUGCUGCUGUGCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCAUUGGCGUGGUGUGGCAUG .((((((((....)---------))))))).((((((..(((.(((((.((...((..((.......))..)).....))...))))).))).)))))). ( -35.70) >DroAna_CAF1 15032 83 - 1 UAUU------------GCUG---UUG-UGCCUCGCCAGGGCUUCGCUACGUGUUGUUUCAUCAACUUC-GGACUUGUGGCCUAUGGCAUGGUGUGGCAUG ....------------..((---(..-((((..(((((((((.((...((.((((......))))..)-)....)).))))).))))..))))..))).. ( -29.00) >consensus UGCAGCGGCUGGUG_________UUGCUGCUGUGCCAAGGCUUCGCUACGUGUUGUUUCAUCAACUUUGGGACUUGUAGCCAUUGGCGUGGUGUGGCAUG ...........................((((..((((..(((..((((((....((((((.......)))))).))))))....))).))))..)))).. (-22.86 = -23.78 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:55 2006