Locus 2252

Sequence ID 2R_DroMel_CAF1
Location 8,292,201 – 8,292,302
Length 101
Max. P 0.551105
window3704

overview

Window 4

Location 8,292,201 – 8,292,302
Length 101
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 90.93
Mean single sequence MFE -27.24
Consensus MFE -21.92
Energy contribution -22.12
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.80
SVM decision value 0.03
SVM RNA-class probability 0.551105
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 8292201 101 - 20766785
GUAGAAGCAUCGAACCGGCUGCGACAGCUGCAGACUCAGAUGCA------------GAUACAGAUAUAUCUACCAGAUACAUCAACAUCCCGCAAGCGGAGCUAAACGUAGCA
(((...(((((.......(((((.....))))).....))))).------------..))).(((.((((.....)))).)))....((((....).)))((((....)))). ( -28.40)
>DroSec_CAF1 17914 101 - 1
GUAGAAGCAUCGAACCGGCUGCGACAGCUGCAGACUCAGAUGCA------------GAUACAGAUACAACUACCAGAUACAUCAACAUCCCGCAAGCGGAGCUAAACGGAGCA
(((...(((((.......(((((.....))))).....))))).------------..)))..........................((((....).)))(((......))). ( -23.00)
>DroSim_CAF1 13300 101 - 1
GUGGAAGCAUCGAACCGGCUGCGACAGCUGCAGACUCAGAUGCA------------GAUACAGAUACAUCUACCAGAUACAUCAACAUCCCGCAAGCGGAGCUAAACGGAGCA
.(((..(((((.......(((((.....))))).....)))))(------------(((........)))).)))............((((....).)))(((......))). ( -25.00)
>DroEre_CAF1 14043 101 - 1
GGAGAAGCAUCGAACCGGCAGCGACAGCUGCAGACUGCGAUGCA------------GAUACAGAUACAUCUACCAGAUACAUCAACAUCCCGCAAGCGGAGCUAAACGCAGCA
((.((.((((((.....(((((....)))))......)))))).------------......(((..(((.....)))..)))....))))((..(((........))).)). ( -30.70)
>DroYak_CAF1 14208 113 - 1
GGAGAAGCAUCGAACCGGCAGCGACAGCUGCAGACUCAGAUGCAGAUGCAGAUACAGAUACAGAUACAUCUAUCAGAUACAUCAACAUCCCGCAAGCGGAGCUAAGCGCAGCA
......(((((((....(((((....)))))....)).))))).((((..(((..((((........))))))).....))))....((((....).)))(((......))). ( -29.10)
>consensus
GUAGAAGCAUCGAACCGGCUGCGACAGCUGCAGACUCAGAUGCA____________GAUACAGAUACAUCUACCAGAUACAUCAACAUCCCGCAAGCGGAGCUAAACGCAGCA
......(((((......((.((....)).)).......)))))...................(((..(((.....)))..)))....((((....).)))(((......))). (-21.92 = -22.12 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:54 2006