Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,290,278 – 8,290,394 |
Length | 116 |
Max. P | 0.993122 |
Location | 8,290,278 – 8,290,394 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 68.11 |
Mean single sequence MFE | -26.23 |
Consensus MFE | -14.31 |
Energy contribution | -15.06 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.36 |
Mean z-score | -2.18 |
Structure conservation index | 0.55 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8290278 116 - 20766785 AAUGUUGCAGUUAAUAAGUGUGGCUUUUAAUAAAUUUAAGGGGCAAUGAUUUCUGCUACAUUGGCUUUUAUAAAAUCUAGUUAUAAAAUCAC---GUAGUGCAACAUAAAAAGGAGCUA .(((((((............((.(((((((.....))))))).)).........(((((..(((.((((((((.......))))))))))).---))))))))))))............ ( -24.30) >DroSec_CAF1 15843 88 - 1 AAUGUUGCAGUUAAUAAUUGUGGCUUU---------UAAGGGGCAAUGAUUUCUGCUACAUUGGCUUUUAUAAAAUCUAG-------AUUAC---U---UGCAGC---------AGAUA ..((((((((.((((......(..(((---------((((((.(((((..........))))).)))))).)))..)...-------)))).---)---))))))---------).... ( -20.80) >DroEre_CAF1 12122 102 - 1 AAUGCUGCAGUUAAUAAUUGUGGCUUU---------CGGGGGGCAGUGGUUUCUAUUACAUGGGCUUUCAUAAAAUCUAGAUUUUUUGCCACAAUGCAGUGCAGCAUUAAA-------- (((((((((.(.....((((((((...---------..(..(((.(((..........)))..)))..)..(((((....)))))..))))))))..).)))))))))...-------- ( -33.60) >DroYak_CAF1 12197 103 - 1 AAUGUUGCAGUUAAUAAUUGUGGCUUU---------UAAGGGGCAGGGAUUUCACUUACAUUGGGUGUUAUAAAGUCUAGAUUUUUUGCCACAUAGCAUUGCAAUGUUGAG-----C-- (((((((((((.......((((((...---------.((.((((....((..(((((.....)))))..))...))))...))....))))))....)))))))))))...-----.-- ( -26.20) >consensus AAUGUUGCAGUUAAUAAUUGUGGCUUU_________UAAGGGGCAAUGAUUUCUGCUACAUUGGCUUUUAUAAAAUCUAGAUUUUUUACCAC___GCAGUGCAACAUUAAA_____C__ .((((((((.........((((((............((((((.(((((..........))))).)))))).................))))))......))))))))............ (-14.31 = -15.06 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:53 2006