Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 8,289,570 – 8,289,664 |
Length | 94 |
Max. P | 0.971879 |
Location | 8,289,570 – 8,289,664 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.33 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -10.32 |
Energy contribution | -10.97 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.22 |
Mean z-score | -2.62 |
Structure conservation index | 0.39 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 8289570 94 - 20766785 ---------AAAAAGGGAA-GGCGGCAUGUAAAAG-CUGGUAGAAGGCUAAACUUUGCUAGCUUACAGCUCGUAAAUUCU---UUC----GAGAAUUUAUGCAAACUUUC-G-------U ---------......((((-(..(((.((((..((-((((((((.(......))))))))))))))))))((((((((((---...----.))))))))))....)))))-.-------. ( -29.40) >DroPse_CAF1 16613 95 - 1 ---------CAAAAAGUGA-GGCAG----AACAAA-CU---GAAAGUGAAAACUUUUCUGGCUUACAGCUCGUAAAUUCC---UUG----GAAAAUGUAUGCAAACUUUUCGGUAACGGG ---------......((((-(.(((----((....-..---..((((....))))))))).)))))..(((((.....((---...----(((((.((......)))))))))..))))) ( -20.40) >DroSec_CAF1 15192 94 - 1 ---------AAAAAGGGCA-GGCGGCAUGUAAAAG-CUGGUAGAAGGCUAAACUUUGCUAGCUUACAGCUCGUAAAUUCU---UUC----GAGAAUUUAUGCAAACUUUC-G-------U ---------..((((.(((-.(((((.((((..((-((((((((.(......))))))))))))))))).)))(((((((---...----.))))))).)))...)))).-.-------. ( -28.30) >DroEre_CAF1 11441 93 - 1 ---------AAAAAGGAG--AGCGUCAAGUGAAAG-CUGGUGGAAGGCUAAACUUUGCUAGCUUACAGCUCGUAAAUUCU---UUC----GGGAAUUUAUGCAAACUUUC-G-------U ---------..((((..(--(((.((....))(((-((((..((.(......)))..)))))))...))))(((((((((---...----.))))))))).....)))).-.-------. ( -26.30) >DroYak_CAF1 11496 95 - 1 ---------AAAAAGGAGAGAGCGCCAAGUGGAAG-CUGCUAGAAGGCUAAACUUUGCUAGCUUACGGCUCGUAAAUUCU---UUC----GAGAAUUUAUGCAAACUUUC-G-------U ---------......(((((...(((.(((....)-))(((((((((.....)))).)))))....))).((((((((((---...----.))))))))))....)))))-.-------. ( -26.60) >DroAna_CAF1 11251 108 - 1 AGAAAAAAUAAAAAGGGAA-GUG---AGGAGAAAGUCUGGAGAAAGUGAAAACUUUGCUAGCUUACAGCUCGUAAAUUCCCUUUUUGUGAGGAAAUUUAUGCAAACUUUC-G-------U .......((((((((((((-...---(.(((.(((.((((..(((((....))))).)))))))....))).)...))))))))))))..((((.(((....))).))))-.-------. ( -29.90) >consensus _________AAAAAGGGGA_GGCGGCAAGUAAAAG_CUGGUAGAAGGCUAAACUUUGCUAGCUUACAGCUCGUAAAUUCU___UUC____GAGAAUUUAUGCAAACUUUC_G_______U ............((((................(((.((((((((.(......))))))))))))...((..(((((((((...........)))))))))))...))))........... (-10.32 = -10.97 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:52 2006