| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,562,215 – 1,562,334 |
| Length | 119 |
| Max. P | 0.545138 |
| Location | 1,562,215 – 1,562,334 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.72 |
| Mean single sequence MFE | -35.32 |
| Consensus MFE | -24.56 |
| Energy contribution | -25.08 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1562215 119 + 20766785 CUGUCUGCCAAGCCGCUCGAGUUUUGUCCAGGAGGCAGGACUCACCUGUCUUCUAAGAAGACAUAACUCAUUUGCUGCCUUU-UAUCCUCUGAGCGAUAAUAUGCACGCUUUGACGCUUG ........(((((.(.(((((((.((((.((((((((((.....)))))))))).....)))).)))))....(((((...(-(((((.....).)))))...))).))...)))))))) ( -37.10) >DroSec_CAF1 11955 119 + 1 CUGUCUGCCAAGCCGCUCGAGUUUCGUCCAGGAGGCAUGACUCACCUGUCUUCCAAGAAGACAUUACUCAUUUGCUGCCUUU-UAUCCUCCGAGCGAUAUUAUGCGCGCUUCGACGCUUG ..(((....(((((((...(((.((((...(((((.((((......(((((((...)))))))...(......).......)-))))))))..)))).)))..))).)))).)))..... ( -31.50) >DroSim_CAF1 13488 118 + 1 CUG-CUGCCAAGCCGCUCGAGUUUCGUCCAGGAGGCAGGACUCACCUGUCUUCCAAGAAGACAUUACUCAUUUGCUGCCUUU-UAUCCUCCGAGCGAUAUUAUGCGCGCUUCGACGCUUG ..(-(..(.(((((((...(((.((((...(((((.(((.....)))((((((...))))))....................-...)))))..)))).)))..))).)))).)..))... ( -33.80) >DroEre_CAF1 12371 119 + 1 CUGUCUGCCAAUCCGCUCGAGUUUUGUCCAGGAGGCAGGACUCACCUGUCUCCCAAAAAGAUAUUACUCAUUUGCCGCCUUUUCAUCCUCUGAGCGAUGCUGGGCGCU-CUUGGCGCUUG ......(((((...((..((((..((((..(((((((((.....)))))))))......))))..)))).......((((...(((((.....).))))..)))))).-.)))))..... ( -41.60) >DroYak_CAF1 18319 120 + 1 CUUUCUGACAAUCCGCUCAAGUUUUGUCCAGGAGGCAAGACUUACCUGUCUUCUAAAAAGAUAUUACUCAUUUGGUGCCUUUUUAUCCUCUAAGCGAUAUUAGGCGCUACUUGACGCUUG (((((((((((..(......)..)))).)))))))((((.......((((((.....))))))....(((..((((((((...(((((.....).))))..))))))))..)))..)))) ( -32.60) >consensus CUGUCUGCCAAGCCGCUCGAGUUUUGUCCAGGAGGCAGGACUCACCUGUCUUCCAAGAAGACAUUACUCAUUUGCUGCCUUU_UAUCCUCUGAGCGAUAUUAUGCGCGCUUUGACGCUUG .............(((((((((((((((.....))))))))))...((((((.....))))))............................))))).......(((........)))... (-24.56 = -25.08 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:58 2006